Package: BiSEp 2.3

Mark Wappett

BiSEp: Toolkit to Identify Candidate Synthetic Lethality

Enables the user to infer potential synthetic lethal relationships by analysing relationships between bimodally distributed gene pairs in big gene expression datasets. Enables the user to visualise these candidate synthetic lethal relationships.

Authors:Mark Wappett

BiSEp_2.3.tar.gz
BiSEp_2.3.tar.gz(r-4.5-noble)BiSEp_2.3.tar.gz(r-4.4-noble)
BiSEp_2.3.tgz(r-4.4-emscripten)BiSEp_2.3.tgz(r-4.3-emscripten)
BiSEp.pdf |BiSEp.html✨
BiSEp/json (API)

# Install 'BiSEp' in R:
install.packages('BiSEp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • BISEP_dat - A list object containing 3 data frames.
  • BISEP_data - A list object containing 3 data frames.
  • FURE_data - Output matrix from the BIGEE tool
  • INPUT_data - A Log2 Gene Expression matrix
  • MUT_data - A matrix containing discreet mutation calls

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 280 downloads 2 mentions 6 exports 50 dependencies

Last updated 8 months agofrom:cb5a60d3a1. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxOKDec 01 2024

Exports:BEEMBIGEEBISEPexpressionPlotFUREwaterfallPlot

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdigestfastmapfsgenericsGenomeInfoDbGenomeInfoDbDataglueGO.dbGOSemSimhttrIRangesjsonliteKEGGRESTlifecyclemclustmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR.methodsS3R.ooR.utilsR6RcpprlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectoryulab.utilszlibbioc

Synthetic Lethality: A User Guide

Rendered fromBiSEp.Snwusingutils::Sweaveon Dec 01 2024.

Last update: 2024-05-05
Started: 2014-10-21