Package: BiSEp 2.3

Mark Wappett

BiSEp: Toolkit to Identify Candidate Synthetic Lethality

Enables the user to infer potential synthetic lethal relationships by analysing relationships between bimodally distributed gene pairs in big gene expression datasets. Enables the user to visualise these candidate synthetic lethal relationships.

Authors:Mark Wappett

BiSEp_2.3.tar.gz
BiSEp_2.3.tar.gz(r-4.5-noble)BiSEp_2.3.tar.gz(r-4.4-noble)
BiSEp_2.3.tgz(r-4.4-emscripten)BiSEp_2.3.tgz(r-4.3-emscripten)
BiSEp.pdf |BiSEp.html✨
BiSEp/json (API)

# Install 'BiSEp' in R:
install.packages('BiSEp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • BISEP_dat - A list object containing 3 data frames.
  • BISEP_data - A list object containing 3 data frames.
  • FURE_data - Output matrix from the BIGEE tool
  • INPUT_data - A Log2 Gene Expression matrix
  • MUT_data - A matrix containing discreet mutation calls

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

6 exports 0.82 score 49 dependencies 2 mentions 326 downloads

Last updated 5 months agofrom:cb5a60d3a1. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-linuxOKSep 02 2024

Exports:BEEMBIGEEBISEPexpressionPlotFUREwaterfallPlot

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdigestfastmapfsGenomeInfoDbGenomeInfoDbDataglueGO.dbGOSemSimhttrIRangesjsonliteKEGGRESTlifecyclemclustmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR.methodsS3R.ooR.utilsR6RcpprlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectoryulab.utilszlibbioc

Synthetic Lethality: A User Guide

Rendered fromBiSEp.Snwusingutils::Sweaveon Sep 02 2024.

Last update: 2024-05-05
Started: 2014-10-21