Package: BiSEp 2.3

Mark Wappett

BiSEp: Toolkit to Identify Candidate Synthetic Lethality

Enables the user to infer potential synthetic lethal relationships by analysing relationships between bimodally distributed gene pairs in big gene expression datasets. Enables the user to visualise these candidate synthetic lethal relationships.

Authors:Mark Wappett

BiSEp_2.3.tar.gz
BiSEp_2.3.tar.gz(r-4.5-noble)BiSEp_2.3.tar.gz(r-4.4-noble)
BiSEp_2.3.tgz(r-4.4-emscripten)BiSEp_2.3.tgz(r-4.3-emscripten)
BiSEp.pdf |BiSEp.html✨
BiSEp/json (API)

# Install 'BiSEp' in R:
install.packages('BiSEp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • BISEP_dat - A list object containing 3 data frames.
  • BISEP_data - A list object containing 3 data frames.
  • FURE_data - Output matrix from the BIGEE tool
  • INPUT_data - A Log2 Gene Expression matrix
  • MUT_data - A matrix containing discreet mutation calls

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 364 downloads 2 mentions 6 exports 49 dependencies

Last updated 11 months agofrom:cb5a60d3a1. Checks:2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 01 2025
R-4.5-linuxOKMar 01 2025

Exports:BEEMBIGEEBISEPexpressionPlotFUREwaterfallPlot

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdigestfastmapfsgenericsGenomeInfoDbGenomeInfoDbDataglueGO.dbGOSemSimhttrIRangesjsonliteKEGGRESTlifecyclemclustmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR.methodsS3R.ooR.utilsR6RcpprlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectoryulab.utils

Synthetic Lethality: A User Guide

Rendered fromBiSEp.Snwusingutils::Sweaveon Mar 01 2025.

Last update: 2024-05-05
Started: 2014-10-21