Package: BayesMultiMode 0.7.2

Paul Labonne

BayesMultiMode: Bayesian Mode Inference

A two-step Bayesian approach for mode inference following Cross, Hoogerheide, Labonne and van Dijk (2024) <doi:10.1016/j.econlet.2024.111579>). First, a mixture distribution is fitted on the data using a sparse finite mixture (SFM) Markov chain Monte Carlo (MCMC) algorithm. The number of mixture components does not have to be known; the size of the mixture is estimated endogenously through the SFM approach. Second, the modes of the estimated mixture at each MCMC draw are retrieved using algorithms specifically tailored for mode detection. These estimates are then used to construct posterior probabilities for the number of modes, their locations and uncertainties, providing a powerful tool for mode inference.

Authors:Nalan Baştürk [aut], Jamie Cross [aut], Peter de Knijff [aut], Lennart Hoogerheide [aut], Paul Labonne [aut, cre], Herman van Dijk [aut]

BayesMultiMode_0.7.2.tar.gz
BayesMultiMode_0.7.2.tar.gz(r-4.5-noble)BayesMultiMode_0.7.2.tar.gz(r-4.4-noble)
BayesMultiMode_0.7.2.tgz(r-4.4-emscripten)BayesMultiMode_0.7.2.tgz(r-4.3-emscripten)
BayesMultiMode.pdf |BayesMultiMode.html
BayesMultiMode/json (API)
NEWS

# Install 'BayesMultiMode' in R:
install.packages('BayesMultiMode', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/paullabonne/bayesmultimode/issues

Datasets:
  • ct47 - X chromosomal macrosatellite repeats ct47
  • cyclone - Tropical cyclones lifetime maximum intensity
  • d4z4 - Autosomal macrosatellite repeats d4z4
  • galaxy - Galaxy series

2.18 score 6 scripts 255 downloads 6 exports 90 dependencies

Last updated 5 days agofrom:2621e6a021. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-linuxOKOct 26 2024

Exports:bayes_fitbayes_mixturebayes_modebayes_tracemix_modemixture

Dependencies:abindapeassertthatbackportsbayesplotbootbroomcarcarDatacheckmateclicodacolorspacecorpcorcorrplotcowplotcpp11cubatureDerivdigestdistributionaldoBydplyrfansifarverFormulagenericsggplot2ggpubrggrepelggridgesggsciggsignifgluegridExtragtablegtoolsisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsMCMCglmmmgcvmicrobenchmarkminqamnormtmodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpolynomposteriorpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreshape2rlangrstatixscalessnSparseMstringistringrsurvivaltensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr