Package: BayesGOF 5.2

Doug Fletcher

BayesGOF: Bayesian Modeling via Frequentist Goodness-of-Fit

A Bayesian data modeling scheme that performs four interconnected tasks: (i) characterizes the uncertainty of the elicited parametric prior; (ii) provides exploratory diagnostic for checking prior-data conflict; (iii) computes the final statistical prior density estimate; and (iv) executes macro- and micro-inference. Primary reference is Mukhopadhyay, S. and Fletcher, D. 2018 paper "Generalized Empirical Bayes via Frequentist Goodness of Fit" (<https://www.nature.com/articles/s41598-018-28130-5 >).

Authors:Subhadeep Mukhopadhyay, Douglas Fletcher

BayesGOF_5.2.tar.gz
BayesGOF_5.2.tar.gz(r-4.5-noble)BayesGOF_5.2.tar.gz(r-4.4-noble)
BayesGOF_5.2.tgz(r-4.4-emscripten)BayesGOF_5.2.tgz(r-4.3-emscripten)
BayesGOF.pdf |BayesGOF.html
BayesGOF/json (API)

# Install 'BayesGOF' in R:
install.packages('BayesGOF', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • AutoIns - Number of claims on an insurance policy
  • ChildIll - Frequency of child illness
  • CorbBfly - Corbet's Butterfly data
  • NorbergIns - Norberg life insurance data
  • arsenic - Arsenic levels in oyster tissue
  • galaxy - Galaxy Data
  • rat - Rat Tumor Data
  • ship - Portsmouth Navy Shipyard Data
  • steroid - Nasal Steroid Data
  • surg - Intestinal surgery data
  • tacks - Rolling Tacks Data
  • terb - Terbinafine trial data
  • ulcer - Recurrent Bleeding of Ulcers

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.56 score 1 packages 12 scripts 270 downloads 1 mentions 41 exports 5 dependencies

Last updated 6 years agofrom:add399975c. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linuxNOTEOct 31 2024

Exports:DS.entropyDS.Finite.BayesDS.macro.infDS.macro.inf.bbuDS.macro.inf.nnuDS.macro.inf.pgeDS.macro.inf.pguDS.micro.infDS.micro.inf.bbuDS.micro.inf.nnuDS.micro.inf.pgeDS.micro.inf.pguDS.posterior.reduceDS.priorDS.prior.bbuDS.prior.nnuDS.prior.pguDS.samplerDS.sampler.postEXP.scoregLP.basisgMLE.bbgMLE.nngMLE.pgLocal.ModeLP.smoothmaxent.LP.parmaxent.obj.convertplot.DS_FB_objplot.DS_GFplot.DS_GF_macro_meanplot.DS_GF_macro_modeplot.DS_GF_microprint.DS_FB_objprint.DS_GFprint.DS_GF_macro_meanprint.DS_GF_macro_modeprint.DS_GF_microReduce.LP.coef.univrPPD.dsweight.fun.univ

Dependencies:Bolstad2nleqslvorthopolynompolynomVGAM

Bayesian Modeling via Frequentist Goodness-of-Fit

Rendered fromvignette_BayesGOF.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2018-10-09
Started: 2018-01-05

Readme and manuals

Help Manual

Help pageTopics
Bayesian Modeling via Frequentist Goodness-of-FitBayesGOF-package BayesGOF
Arsenic levels in oyster tissuearsenic
Number of claims on an insurance policyAutoIns
Frequency of child illnessChildIll
Corbet's Butterfly dataCorbBfly
Full and Excess Entropy of DS(G,m) priorDS.entropy
Conduct Finite Bayes Inference on a DS objectDS.Finite.Bayes plot.DS_FB_obj print.DS_FB_obj
Execute MacroInference (mean or mode) on a DS objectDS.GF.macro.obj DS.macro.inf DS.macro.inf.bbu DS.macro.inf.nnu DS.macro.inf.pge DS.macro.inf.pgu Local.Mode plot.DS_GF_macro_mean plot.DS_GF_macro_mode print.DS_GF_macro_mean print.DS_GF_macro_mode
MicroInference for DS Prior ObjectsDS.GF.micro.obj DS.micro.inf DS.micro.inf.bbu DS.micro.inf.nnu DS.micro.inf.pge DS.micro.inf.pgu plot.DS_GF_micro print.DS_GF_micro
Posterior Expectation and Modes of DS objectDS.posterior.reduce
Prior Diagnostics and EstimationDS.GF.obj DS.prior DS.prior.bbu DS.prior.nnu DS.prior.pgu EXP.score LP.smooth maxent.LP.par maxent.obj.convert plot.DS_GF print.DS_GF Reduce.LP.coef.univ weight.fun.univ
Samples data from DS(G,m) distribution.DS.sampler DS.sampler.post rPPD.ds
Galaxy Datagalaxy
Determine LP basis functions for prior distribution ggLP.basis
Beta-Binomial Parameter EstimationgMLE.bb mom.est
Normal-Normal Parameter EstimationgMLE.nn
Negative-Binomial Parameter EstimationgMLE.pg
Norberg life insurance dataNorbergIns
Rat Tumor Datarat
Portsmouth Navy Shipyard Dataship
Nasal Steroid Datasteroid
Intestinal surgery datasurg
Rolling Tacks Datatacks
Terbinafine trial dataterb
Recurrent Bleeding of Ulcersulcer