Introduction | Model specification | Estimand and adjusted models | Package Functionality through Examples | Summary | G-computation procedure | Borrowing profiles | Additional Plots
Package: BayesFBHborrow 2.0.14
Grant Izmirlian
BayesFBHborrow: Bayesian Dynamic Borrowing with Flexible Baseline Hazard Function
Allows Bayesian borrowing from a historical dataset for time-to- event data. A flexible baseline hazard function is achieved via a piecewise exponential likelihood with time varying split points and smoothing prior on the historic baseline hazards. The method is described in Scott and Lewin (2026) <doi:10.1093/biostatistics/kxag006>, and a paper focused on the software is in Scott, Axillus, Lewin and Izmirlian (2026) <doi:10.48550/arXiv.2408.04327>.
Authors:
BayesFBHborrow_2.0.14.tar.gz
BayesFBHborrow_2.0.14.tar.gz(r-4.7-any)BayesFBHborrow_2.0.14.tar.gz(r-4.6-any)
BayesFBHborrow_2.0.14.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BayesFBHborrow/json (API)
| # Install 'BayesFBHborrow' in R: |
| install.packages('BayesFBHborrow', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:9e04ca261e. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 192 | ||
| source / vignettes | OK | 275 | ||
| linux-release-x86_64 | OK | 249 | ||
| wasm-release | OK | 158 |
Exports:BayesFBHborrowcicoefficientsCombinegenBFBHBdatgroup_summaryinit_lambda_hyperparameterskableread_haz_mcmc_smplsSurvxifinder
Dependencies:abindbackportsbase64encbayestestRbootbroombslibcachemcarcarDatacheckmateclicolorspacecommonmarkcorrplotcowplotcpp11curldatawizardDerivdigestdoBydplyrevaluateexactRankTestsextraDistrfarverfastmapfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrhtmltoolsinsightinvgammaisobandjpegjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmaxstatmemoisemgcvmimeminqamodelrmvtnormnlmenloptrnnetnumDerivpatchworkpbkrtestpillarpkgconfigpngpolynompurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixrstudioapiS7sassscalesSparseMstringistringrsurvivalsurvminersvglitesystemfontstextshapingtibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunxml2yamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit the Bayesian Flexible Baseline Hazard Model with Borrowing via MCMC/MH | BayesFBHborrow |
| The coefficients extractor method for the 'BayesFBHborrow' class | coef.BayesFBHborrow coefficients |
| An Method for Easily Combining Two Similar BayesFBHborrow Plots | Combine |
| Generate Current Trial/Historical Controls via Weibull Model | genBFBHBdat |
| Create group level data | group_summary |
| Initialize lambda hyperparameters | init_lambda_hyperparameters |
| Plot Method for the BayesFBHborrow Class | plot.BayesFBHborrow |
| Reads in Fine Mesh Grid Hazards MCMC Samples | read_haz_mcmc_smpls |
| Summary Method for the BayesFBHborrow Class | summary.BayesFBHborrow |
| The Update Method for the 'BayesFBHborrow' Class | update.BayesFBHborrow |
| Find the root of the $p_0$ mixture probability equation | xifinder |