Package: BayesDLMfMRI 0.0.3
BayesDLMfMRI: Statistical Analysis for Task-Based Fmri Data
The 'BayesDLMfMRI' package performs statistical analysis for task-based functional magnetic resonance imaging (fMRI) data at both individual and group levels. The analysis to detect brain activation at the individual level is based on modeling the fMRI signal using Matrix-Variate Dynamic Linear Models (MDLM). The analysis for the group stage is based on posterior distributions of the state parameter obtained from the modeling at the individual level. In this way, this package offers several R functions with different algorithms to perform inference on the state parameter to assess brain activation for both individual and group stages. Those functions allow for parallel computation when the analysis is performed for the entire brain as well as analysis at specific voxels when it is required. References: Cardona-Jiménez (2021) <doi:10.1016/j.csda.2021.107297>; Cardona-Jiménez (2021) <arxiv:2111.01318>.
Authors:
BayesDLMfMRI_0.0.3.tar.gz
BayesDLMfMRI_0.0.3.tar.gz(r-4.5-noble)BayesDLMfMRI_0.0.3.tar.gz(r-4.4-noble)
BayesDLMfMRI_0.0.3.tgz(r-4.4-emscripten)BayesDLMfMRI_0.0.3.tgz(r-4.3-emscripten)
BayesDLMfMRI.pdf |BayesDLMfMRI.html✨
BayesDLMfMRI/json (API)
# Install 'BayesDLMfMRI' in R: |
install.packages('BayesDLMfMRI', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/johnatanlab/bayesdlmfmri/issues
- Covariates - Covariates related to the observed BOLD response
- ffd - MNI image used to plot posterior probability maps in the vignette examples.
- mask - A 3D array that works as a brain of reference (MNI atlas).
Last updated 1 years agofrom:2819454db0. Checks:ERROR: 1 NOTE: 1. Indexed: no.
Target | Result | Date |
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Doc / Vignettes | FAIL | Jul 24 2024 |
R-4.5-linux-x86_64 | NOTE | Jul 24 2024 |
Exports:ffdEvidenceFETSffdEvidenceFFBSffdEvidenceFSTSffdGroupEvidenceFETSffdGroupEvidenceFFBSffdGroupEvidenceFSTSget_example_fMRI_dataget_example_fMRI_data_groupGroupSingleVoxelFETSGroupSingleVoxelFFBSGroupSingleVoxelFSTSplot.fMRI_single_evidenceprint.fMRI_group_evidenceprint.fMRI_group_single_voxelprint.fMRI_single_evidenceprint.fMRI_single_voxelSingleVoxelFETSSingleVoxelFFBSSingleVoxelFSTSsummary.fMRI_group_evidencesummary.fMRI_single_evidence
Dependencies:abindbitopsmathjaxrmatrixStatsneurobaseoro.niftipbapplyR.methodsS3R.ooR.utilsrbibutilsRcppRcppArmadilloRcppDistRdpackRNifti
Group_analysis
Rendered fromGroup_analysis.Rmd
usingknitr::rmarkdown_notangle
on Jul 24 2024.Last update: 2023-09-09
Started: 2023-01-25
Individual_analysis
Rendered fromIndividual_analysis.Rmd
usingknitr::rmarkdown_notangle
on Jul 24 2024.Last update: 2023-02-10
Started: 2023-01-25