Package: BSPBSS 1.0.6
BSPBSS: Bayesian Spatial Blind Source Separation
Gibbs sampling for Bayesian spatial blind source separation (BSP-BSS). BSP-BSS is designed for spatially dependent signals in high dimensional and large-scale data, such as neuroimaging. The method assumes the expectation of the observed images as a linear mixture of multiple sparse and piece-wise smooth latent source signals, and constructs a Bayesian nonparametric prior by thresholding Gaussian processes. Details can be found in our paper: Wu, B., Guo, Y., & Kang, J. (2024). Bayesian spatial blind source separation via the thresholded gaussian process. Journal of the American Statistical Association, 119(545), 422-433.
Authors:
BSPBSS_1.0.6.tar.gz
BSPBSS_1.0.6.tar.gz(r-4.7-arm64)BSPBSS_1.0.6.tar.gz(r-4.7-x86_64)BSPBSS_1.0.6.tar.gz(r-4.6-arm64)BSPBSS_1.0.6.tar.gz(r-4.6-x86_64)
BSPBSS_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BSPBSS/json (API)
| # Install 'BSPBSS' in R: |
| install.packages('BSPBSS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:e87a842645. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 163 | ||
| linux-devel-x86_64 | OK | 168 | ||
| source / vignettes | OK | 245 | ||
| linux-release-arm64 | OK | 170 | ||
| linux-release-x86_64 | OK | 173 | ||
| wasm-release | OK | 132 |
Exports:init_bspbsslevelplot2Dmcmc_bspbssoutput_niipre_niisim_2Dimagesum_mcmc_bspbss
Dependencies:abindBayesGPfitbitopscaToolscliclueclustercodetoolscpp11farverforeachggplot2glmnetgluegplotsgridExtragtablegtoolsicaisobanditeratorsKernSmoothlabelinglatticelifecycleMatrixmatrixStatsmovMFneurobaseoro.niftiR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenrlangRNiftirstiefelS7scalesshapeskmeansslamsurvivalsvdvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Initial values | init_bspbss |
| levelplot for 2D images. | levelplot2D |
| MCMC algorithm for Bayesian spatial blind source separation with the thresholded Gaussian Process prior. | mcmc_bspbss |
| Write a NIfTI file. | output_nii |
| Transforms NIfTI to matrix | pre_nii |
| Simulate image data using ICA | sim_2Dimage |
| Summarization of the MCMC result. | sum_mcmc_bspbss |
