Package: BMA 3.18.19

Hana Sevcikova

BMA: Bayesian Model Averaging

Package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression).

Authors:Adrian Raftery [aut], Jennifer Hoeting [aut], Chris Volinsky [aut], Ian Painter [aut], Ka Yee Yeung [aut], Hana Sevcikova [cre]

BMA_3.18.19.tar.gz
BMA_3.18.19.tar.gz(r-4.5-noble)BMA_3.18.19.tar.gz(r-4.4-noble)
BMA_3.18.19.tgz(r-4.4-emscripten)BMA_3.18.19.tgz(r-4.3-emscripten)
BMA.pdf |BMA.html✨
BMA/json (API)

# Install 'BMA' in R:
install.packages('BMA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hanase/bma/issues

Datasets:
  • race - Scottish Hill Racing data
  • vaso - Vaso data

6.28 score 5 stars 15 packages 134 scripts 6.3k downloads 69 mentions 52 exports 10 dependencies

Last updated 5 days agofrom:b5b0e69491. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 19 2024
R-4.5-linux-x86_64OKOct 19 2024

Exports:as.bic.glmas.bic.glm.glibbic.glmbic.glm.data.framebic.glm.formulabic.glm.matrixbic.survbic.surv.data.framebic.surv.formulabic.surv.matrixbicregFor.MC3.REGglibglib.bic.glmglib.data.frameglib.matrixiBMA.bicregiBMA.bicreg.data.frameiBMA.bicreg.iBMA.intermediate.bicregiBMA.bicreg.matrixiBMA.glmiBMA.glm.data.frameiBMA.glm.iBMA.intermediate.glmiBMA.glm.matrixiBMA.surviBMA.surv.data.frameiBMA.surv.iBMA.intermediate.surviBMA.surv.matriximageplot.bmaMC3.REGMC3.REG.chooseMC3.REG.logpostorderplotorderplot.iBMA.bicregorderplot.iBMA.glmorderplot.iBMA.intermediate.bicregorderplot.iBMA.intermediate.glmorderplot.iBMA.intermediate.survorderplot.iBMA.survout.ltsregprint.iBMA.bicregprint.iBMA.glmprint.iBMA.intermediate.bicregprint.iBMA.intermediate.glmprint.iBMA.intermediate.survprint.iBMA.survsummary.iBMA.bicregsummary.iBMA.glmsummary.iBMA.intermediate.bicregsummary.iBMA.intermediate.glmsummary.iBMA.intermediate.survsummary.iBMA.surv

Dependencies:DEoptimRinlinelatticeleapsMatrixmvtnormpcaPProbustbaserrcovsurvival

Readme and manuals

Help Manual

Help pageTopics
Bayesian Model Averaging for generalized linear models.bic.glm bic.glm.data.frame bic.glm.formula bic.glm.matrix
Bayesian Model Averaging for Survival models.bic.surv bic.surv.data.frame bic.surv.formula bic.surv.matrix
Bayesian Model Averaging for linear regression models.bicreg
Helper function for MC3.REGFor.MC3.REG
Model uncertainty in generalized linear models using Bayes factorsas.bic.glm as.bic.glm.glib glib glib.bic.glm glib.data.frame glib.matrix
Iterated Bayesian Model Averaging variable selection for generalized linear models, linear models or survival models.iBMA iBMA.bicreg iBMA.bicreg.data.frame iBMA.bicreg.iBMA.intermediate.bicreg iBMA.bicreg.matrix iBMA.glm iBMA.glm.data.frame iBMA.glm.iBMA.intermediate.glm iBMA.glm.matrix iBMA.surv iBMA.surv.data.frame iBMA.surv.iBMA.intermediate.surv iBMA.surv.matrix
Images of models used in Bayesian model averagingimageplot.bma
Bayesian simultaneous variable selection and outlier identificationas.data.frame.mc3 MC3.REG [.mc3
Helper function to MC3.REGMC3.REG.choose
Helper function to MC3.REGMC3.REG.logpost
Orderplot of iBMA objectsorderplot orderplot.iBMA.bicreg orderplot.iBMA.glm orderplot.iBMA.intermediate.bicreg orderplot.iBMA.intermediate.glm orderplot.iBMA.intermediate.surv orderplot.iBMA.surv
out.ltsregout.ltsreg
Plots the posterior distributions of coefficients derived from Bayesian model averagingplot plot.bic.glm plot.bic.surv plot.bicreg
Predict function for Bayesian Model Averaging for generalized linear models.predict.bic.glm
Predict function for Bayesian Model Averaging for linear models.predict.bicreg
Scottish Hill Racing datarace
Summaries of Bayesian model averaging objectsprint print.bic.glm print.bic.surv print.bicreg print.glib print.mc3 summary summary.bic.glm summary.bic.surv summary.bicreg summary.glib summary.mc3
Summaries of iterated Bayesian model averaging objectsprint.iBMA.bicreg print.iBMA.glm print.iBMA.intermediate.bicreg print.iBMA.intermediate.glm print.iBMA.intermediate.surv print.iBMA.surv summary.iBMA.bicreg summary.iBMA.glm summary.iBMA.intermediate.bicreg summary.iBMA.intermediate.glm summary.iBMA.intermediate.surv summary.iBMA.surv
Vaso datavaso