Package: BIOdry 0.9.6

Wilson Lara-Henao

BIOdry: Multilevel Modeling of Dendroclimatical Fluctuations

Processes multilevel ecological data series (MEDS) arranged in temporal or spatial hierarchies defined by sampling designs. The package recursively applies one-level stage functions to long-format tree-ring and climate data, then optionally fits a terminal model to the processed series. Terminal fits currently include mixed-effects detrending through 'nlme' and Friedman supersmoother detrending through supsmu() of 'stats'. The package also supports post-detrending comparison and inference tools for multilevel dendroclimatic analyses. The method is described in Lara et al. (2018) <doi:10.1371/journal.pone.0196923>.

Authors:Wilson Lara-Henao [aut, cre], Felipe Bravo [aut]

BIOdry_0.9.6.tar.gz
BIOdry_0.9.6.zip(r-4.7-any)BIOdry_0.9.6.zip(r-4.6-any)
BIOdry_0.9.6.tar.gz(r-4.7-any)BIOdry_0.9.6.tar.gz(r-4.6-any)
BIOdry_0.9.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BIOdry/json (API)

# Install 'BIOdry' in R:
install.packages('BIOdry', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Pchron - Tree-ring width (TRW) chronology
  • Pradii03 - Vector of radii measured on P.pinaster
  • Prec - Cumulative precipitations
  • Prings05 - Multilevel data set of P. pinaster
  • PTclim05 - Multilevel data set of monthly cumulative precipitations and monthly average temperatures
  • Temp - Average temperatures

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 scripts 386 downloads 1 mentions 30 exports 13 dependencies

Last updated from:745830fb38. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK166
source / vignettesOK187
linux-releaseOK114
windows-develOK125
windows-releaseOK89
wasm-releaseOK96

Exports:amodanova.frametoLmeanova.modelFramearguSelectcClassdefineDataRolesframetoFriedmanframetoLmeFriedmanFormlevexplmeFormmodelFramemoveYrmuleManmUnitsnormalizeGroupLevelsplot.modelFrameplot.muleManplot.wlaiprint.frametoLmeprint.modelFrameringApplyrtimesscacumshiftFrameslitFramesummary.modelFrametdFormupdate.frametoLmewlai

Dependencies:clicpp11ecodistglueigraphlatticelifecyclemagrittrMatrixnlmepkgconfigrlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Multilevel Modeling of Dendroclimatical FluctuationsBIOdry-package BIOdry
amodamod
Compare frametoLme objectsanova.frametoLme
Compare modelFrame objectsanova.modelFrame
Argument selectionarguSelect
Column-class extractioncClass
defineDataRolesdefineDataRoles
Friedman supersmoother detrendingframetoFriedman
LME modelingframetoLme
Friedman terminal specificationFriedmanForm
levexplevexp
LME formulalmeForm
Recursive dispatch of multilevel series functionsmodelFrame
Seasonal yearsmoveYr
Multilevel dendroclimatic correlogramsmuleMan
Metric systemmUnits
Order grouping levelsnormalizeGroupLevels
Tree-ring width (TRW) chronologyPchron
Plot Friedman fluctuation series over timeplot.frametoFriedman
Plot frametoLme objectsplot.frametoLme
Plot modelFrame objectsplot.modelFrame
Plot muleMan objectsplot.muleMan
Plot Walter-Lieth climate diagramsplot.wlai
Vector of radii measured on P.pinasterPradii03
Cumulative precipitationsPrec
Multilevel data set of P. pinasterPrings05
Print frametoFriedman objectsprint.frametoFriedman
Print frametoLme objectsprint.frametoLme
Print modelFrame objectsprint.modelFrame
Print compact frametoFriedman summariesprint.summary.frametoFriedman
Print compact frametoLme summariesprint.summary.frametoLme
Print compact modelFrame summariesprint.summary.modelFrame
Multilevel data set of monthly cumulative precipitations and monthly average temperaturesPTclim05
Multilevel applyringApply
Time-units synchronizationrtimes
scacumscacum
shiftFrameshiftFrame
slitFrameslitFrame
Summarize frametoFriedman objectssummary.frametoFriedman
Summarize frametoLme objectssummary.frametoLme
Summarize modelFrame objectssummary.modelFrame
ltd formulastdForm
Average temperaturesTemp
Update frametoLme objectsupdate.frametoLme
Walter-Lieth aridity indexwlai