Loading prior bindings and gene expression data | Initializing BICORN | Running BICORN | BICORN outputs
Package: BICORN 0.1.0
Xi Chen
BICORN: Integrative Inference of De Novo Cis-Regulatory Modules
Prior transcription factor binding knowledge and target gene expression data are integrated in a Bayesian framework for functional cis-regulatory module inference. Using Gibbs sampling, we iteratively estimate transcription factor associations for each gene, regulation strength for each binding event and the hidden activity for each transcription factor.
Authors:
BICORN_0.1.0.tar.gz
BICORN_0.1.0.tar.gz(r-4.7-any)BICORN_0.1.0.tar.gz(r-4.6-any)
BICORN_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BICORN/json (API)
| # Install 'BICORN' in R: |
| install.packages('BICORN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Binding_genes - Genes in the prior binding network
- Binding_matrix - Prior TF-gene binding network
- Binding_TFs - TFs in the prior binding network
- Exp_data - Gene expression data
- Exp_genes - Genes in the expression data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:acf2011f4a. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 118 | ||
| source / vignettes | OK | 199 | ||
| linux-release-x86_64 | OK | 110 | ||
| wasm-release | OK | 89 |
Exports:BICORNdata_integration
Dependencies:
