Package: BENMMI 4.3-7
Dennis Walvoort
BENMMI: Benthic Multi-Metric Index
Analysis tool for evaluating benthic multimetric indices (BENMMIs). It generates reproducible reports on the analysis of benthic data, e.g., validation and correction of species names, sample pooling, automatic conversion of genus to species names, outlier detection, benthic indicator calculation, optimization of single and multimetric indicators against a pressure gradient, and spatial aggregation of benthic indicators. One of its use cases was the development of a common benthic indicator for <https://www.ospar.org> (publication accepted by Ecological Indicators). See Van Loon et al. (2018) <doi:10.1016/j.ecolind.2017.09.029> for details.
Authors:
BENMMI_4.3-7.tar.gz
BENMMI_4.3-7.tar.gz(r-4.5-noble)BENMMI_4.3-7.tar.gz(r-4.4-noble)
BENMMI_4.3-7.tgz(r-4.4-emscripten)BENMMI_4.3-7.tgz(r-4.3-emscripten)
BENMMI.pdf |BENMMI.html✨
BENMMI/json (API)
NEWS
| # Install 'BENMMI' in R: |
| install.packages('BENMMI', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:5edc8a55e1. Checks:ERROR: 1 OK: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Oct 28 2024 |
| R-4.5-linux | OK | Oct 28 2024 |
Exports:benmmiBENMMIBENMMIdirci_meantoString_weights
Dependencies:benthosbitbit64clicliprcolorspacecommonmarkcpp11crayondplyrevaluatefansifarvergenericsggplot2gluegtablehighrhmsisobandjsonliteknitrlabelinglatticelazyevallifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxtableyaml
BENMMI: An Introduction
Rendered fromBENMMI_User_Manual.Rnwusingknitr::knitron Oct 28 2024.Last update: 2020-10-12
Started: 2020-10-12
BENMMI: FAQ
Rendered fromFAQ.Rnwusingknitr::knitron Oct 28 2024.Last update: 2020-10-12
Started: 2020-10-12
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Perform BENMMI Analysis | BENMMI benmmi |
| Benthic Multi-Metric Indicator Analysis | benmmi-pkg _PACKAGE |
| Create BENMMI Directory Structure | BENMMIdir |
| Mean and Confidence Interval | ci_mean |
| Read and Validate BENMMI Input Files | read_mmi |
| Read BENMMI Settings File | read_settings |
| Construct a Text Representation of a Weight Vector | toString_weights |