Package: BCHM 1.00
J. Jack Lee
BCHM: Clinical Trial Calculation Based on BCHM Design
Users can estimate the treatment effect for multiple subgroups basket trials based on the Bayesian Cluster Hierarchical Model (BCHM). In this model, a Bayesian non-parametric method is applied to dynamically calculate the number of clusters by conducting the multiple cluster classification based on subgroup outcomes. Hierarchical model is used to compute the posterior probability of treatment effect with the borrowing strength determined by the Bayesian non-parametric clustering and the similarities between subgroups. To use this package, 'JAGS' software and 'rjags' package are required, and users need to pre-install them.
Authors:
BCHM_1.00.tar.gz
BCHM_1.00.tar.gz(r-4.7-any)BCHM_1.00.tar.gz(r-4.6-any)
BCHM_1.00.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BCHM/json (API)
| # Install 'BCHM' in R: |
| install.packages('BCHM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
- c++– GNU Standard C++ Library v3
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:0e845f7f8d. Checks:2 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 114 | ||
| source / vignettes | OK | 194 | ||
| linux-release-x86_64 | NOTE | 122 | ||
| wasm-release | OK | 115 |
Exports:BCHMBCHMplot_clusterBCHMplot_post_distBCHMplot_post_value
Dependencies:clustercodacrayonevaluatehighrknitrlatticeplyrRcpprjagsxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Perform the analysis based on the BCHM design. | BCHM |
| Plot the clustering results of subgroups. | BCHMplot_cluster |
| Plot the posterior distributions of subgroups. | BCHMplot_post_dist |
| Plot the posterior response of subgroups. | BCHMplot_post_value |
