Package: BCClong 1.0.3

Zhiwen Tan

BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features

It is very common nowadays for a study to collect multiple features and appropriately integrating multiple longitudinal features simultaneously for defining individual clusters becomes increasingly crucial to understanding population heterogeneity and predicting future outcomes. 'BCClong' implements a Bayesian consensus clustering (BCC) model for multiple longitudinal features via a generalized linear mixed model. Compared to existing packages, several key features make the 'BCClong' package appealing: (a) it allows simultaneous clustering of mixed-type (e.g., continuous, discrete and categorical) longitudinal features, (b) it allows each longitudinal feature to be collected from different sources with measurements taken at distinct sets of time points (known as irregularly sampled longitudinal data), (c) it relaxes the assumption that all features have the same clustering structure by estimating the feature-specific (local) clusterings and consensus (global) clustering.

Authors:Zhiwen Tan [aut, cre], Zihang Lu [ctb], Chang Shen [ctb]

BCClong_1.0.3.tar.gz
BCClong_1.0.3.zip(r-4.7-x86_64)BCClong_1.0.3.zip(r-4.7-arm64)BCClong_1.0.3.zip(r-4.6-x86_64)BCClong_1.0.3.zip(r-4.6-arm64)
BCClong_1.0.3.tar.gz(r-4.7-arm64)BCClong_1.0.3.tar.gz(r-4.7-x86_64)BCClong_1.0.3.tar.gz(r-4.6-arm64)BCClong_1.0.3.tar.gz(r-4.6-x86_64)
BCClong_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BCClong/json (API)

# Install 'BCClong' in R:
install.packages('BCClong', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascppopenmp

2.38 score 12 scripts 282 downloads 5 exports 56 dependencies

Last updated from:adbd93d49b. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK203
linux-devel-x86_64OK239
source / vignettesOK314
linux-release-arm64OK199
linux-release-x86_64OK241
windows-devel-arm64OK318
windows-devel-x86_64OK274
windows-release-arm64OK285
windows-release-x86_64OK186
wasm-releaseOK154

Exports:BayesTBCC.multimodel.selection.criteriatraceplottrajplot

Dependencies:abindbootcliclustercodacolorspacecombinatcpp11evdfarverfastGHQuadggplot2gluegmpgridExtragtableisobandlabel.switchinglabelingLaplacesDemonlatticelifecyclelme4lpSolveMASSMatrixMatrixModelsmclustmcmcMCMCpackminqamixAKmnormtmvtnormnlmenloptrnnetquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangRmpfrS7scalesSparseMsurvivaltruncdistvctrsviridisLitewithr

ContinuousData
Introduction | Components | Pre-process (Setting up) | Choose Best Number Of Clusters | Fit BCC Model Using BCC.multi Function | Printing Summary Statistics for key model parameters | Visualize Clusters | Posterior Check | Package References

Last update: 2024-06-25
Started: 2023-01-13

MixedTypeData
Introduction | Components | Pre-process (Setting up) | Fit BCC Model Using BCC.multi Function | Printing Summary Statistics for key model parameters | Visualize Clusters | Package References

Last update: 2024-06-25
Started: 2023-01-13