Package: AlphaPart 0.9.8

Gregor Gorjanc

AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information

A software that implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes. The partitioning method is described in Garcia-Cortes et al. (2008) <doi:10.1017/S175173110800205X>. The package includes the main function AlphaPart for partitioning breeding values and auxiliary functions for manipulating data and summarizing, visualizing, and saving results.

Authors:Gregor Gorjanc [aut, cre], Jana Obsteter [aut], Thiago de Paula Oliveira [aut]

AlphaPart_0.9.8.tar.gz
AlphaPart_0.9.8.tar.gz(r-4.5-noble)AlphaPart_0.9.8.tar.gz(r-4.4-noble)
AlphaPart_0.9.8.tgz(r-4.4-emscripten)AlphaPart_0.9.8.tgz(r-4.3-emscripten)
AlphaPart.pdf |AlphaPart.html✨
AlphaPart/json (API)

# Install 'AlphaPart' in R:
install.packages('AlphaPart', repos = 'https://cloud.r-project.org')
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.30 score 573 downloads 1 mentions 27 exports 38 dependencies

Last updated 2 years agofrom:fc95407917. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-linux-x86_64OKMar 19 2025
R-4.4-linux-x86_64OKMar 19 2025

Exports:.checkLevelsMap.checkListLevelsMap.isCharacterMap.unknownList.unlistLevelsMapAlphaPartAlphaPartSubsetAlphaPartSumas.levelsMapas.listLevelsMapas.object_sizescenterPopgetScaleis.levelsMapis.listLevelsMapis.object_sizesisUnknownmapLevelsmapLevels<-NAToUnknownobject.sizepedFixBirthYearpedSetBasesavePlotsEBVunknownToNAwrite.csv

Dependencies:clicolorspacedirectlabelsdplyrfansifarvergenericsggplot2gluegtableHaploSimisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepedigreepillarpkgconfigplyrquadprogR6RColorBrewerRcppreshaperlangscalestibbletidyselectutf8vctrsviridisLitewithr

AlphaPart - R implementation of the method for partitioning genetic trends

Gregor Gorjanc, Jana Obsteter, Thiago de Paula Oliveira

Rendered fromalphapart-vignette.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2022-09-23
Started: 2021-09-21

Partitioning genetic trends in mean and variance

Gregor Gorjanc, Jana Obsteter, Thiago de Paula Oliveira

Rendered fromalphapart-variance.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2022-09-23
Started: 2022-09-23

Citation

To cite package ‘AlphaPart’ in publications use:

Gorjanc G, Obsteter J, de Paula Oliveira T (2022). AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information. R package version 0.9.8, https://CRAN.R-project.org/package=AlphaPart.

Corresponding BibTeX entry: 

  @Manual{,
    title = {AlphaPart: Partition/Decomposition of Breeding Values by
      Paths of Information},
    author = {Gregor Gorjanc and Jana Obsteter and Thiago {de Paula
      Oliveira}},
    year = {2022},
    note = {R package version 0.9.8},
    url = {https://CRAN.R-project.org/package=AlphaPart},
  }