Package: AlgebraicHaploPackage 1.2
Jan Wolfertz
AlgebraicHaploPackage: Haplotype Two Snips Out of a Paired Group of Patients
Two unordered pairs of data of two different snips positions is haplotyped by resolving a small number ob closed equations.
Authors:
AlgebraicHaploPackage_1.2.tar.gz
AlgebraicHaploPackage_1.2.tar.gz(r-4.5-noble)AlgebraicHaploPackage_1.2.tar.gz(r-4.4-noble)
AlgebraicHaploPackage_1.2.tgz(r-4.4-emscripten)AlgebraicHaploPackage_1.2.tgz(r-4.3-emscripten)
AlgebraicHaploPackage.pdf |AlgebraicHaploPackage.html✨
AlgebraicHaploPackage/json (API)
| # Install 'AlgebraicHaploPackage' in R: |
| install.packages('AlgebraicHaploPackage', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:ec129391a4. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 01 2024 |
| R-4.5-linux | NOTE | Sep 01 2024 |
Exports:callhaplotypecubicfindoptimalhaplotypeitoptimalfrequency
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| AlgebraicHaploPackage- The package haplotype a contingency of two pairs of snips of a sample. | AlgebraicHaploPackage-package AlgebraicHaploPackage |
| calcultes the cotigency table of the haplotypes | callhaplotype |
| Function that can resolve the cubic equation numerical stable and any lower dimensional case except unsolvable cases. | cubic |
| Chose the most likely solution of the three potential onces. | findoptimal |
| Haplotype a 3 x 3 counting matrix. | haplotypeit |
| Evaluate potential haplotypes. | optimalfrequency |