Permutation tests | Approximate unconditional tests | AU and permutation likelihood ratio tests with categorical covariates
Package: AUtests 0.99
Arjun Sondhi
AUtests: Approximate Unconditional and Permutation Tests
Performs approximate unconditional and permutation testing for 2x2 contingency tables. Motivated by testing for disease association with rare genetic variants in case-control studies. When variants are extremely rare, these tests give better control of Type I error than standard tests.
Authors:
AUtests_0.99.tar.gz
AUtests_0.99.tar.gz(r-4.7-any)AUtests_0.99.tar.gz(r-4.6-any)
AUtests_0.99.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
AUtests/json (API)
| # Install 'AUtests' in R: |
| install.packages('AUtests', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:5757768153. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 157 | ||
| source / vignettes | OK | 418 | ||
| linux-release-x86_64 | OK | 150 | ||
| wasm-release | OK | 151 |
Exports:au.firthau.test.stratau.testsbasic.testsperm.test.stratperm.tests
Dependencies:backportsbitbit64bootbroomclicliprcodetoolscpp11crayondplyrforcatsforeachformula.toolsgenericsglmnetgluehavenhmsiteratorsjomolatticelifecyclelme4logistfmagrittrMASSMatrixmgcvmiceminqamitmlnlmenloptrnnetnumDerivoperator.toolsordinalpanpillarpkgconfigprettyunitsprogresspurrrR6rbibutilsRcppRcppEigenRdpackreadrreformulasrlangrpartshapestringistringrsurvivaltibbletidyrtidyselecttzdbucminfutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Firth AU testing | au.firth |
| Stratified AU testing | au.test.strat |
| AU testing | au.tests |
| Basic testing | basic.tests |
| Stratified permutation testing | perm.test.strat |
| Permutation testing | perm.tests |