Package: ABC.RAP 0.9.0

Abdulmonem Alsaleh

ABC.RAP: Array Based CpG Region Analysis Pipeline

It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.

Authors:Abdulmonem Alsaleh [cre, aut], Robert Weeks [aut], Ian Morison [aut], RStudio [ctb]

ABC.RAP_0.9.0.tar.gz
ABC.RAP_0.9.0.tar.gz(r-4.5-noble)ABC.RAP_0.9.0.tar.gz(r-4.4-noble)
ABC.RAP_0.9.0.tgz(r-4.4-emscripten)ABC.RAP_0.9.0.tgz(r-4.3-emscripten)
ABC.RAP.pdf |ABC.RAP.html✨
ABC.RAP/json (API)

# Install 'ABC.RAP' in R:
install.packages('ABC.RAP', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.08 score 12 scripts 275 downloads 10 exports 0 dependencies

Last updated 8 years agofrom:376bfa8ab3. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-linuxOKNov 06 2024

Exports:annotate_dataCpG_hitsdelta_beta_datafilter_dataoverlap_dataplot_candidate_genesplot_dataplot_geneprocess.ABC.RAPttest_data

Dependencies:

Array Based CpG Region Analysis Package (ABC.RAP)

Abdulmonem A. Alsaleh, Robert J. Weeks, Ian M. Morison. Department of Pathology, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand

Rendered fromABC.RAP.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2016-10-20
Started: 2016-10-20