Package: mgi.report.reader 0.1.2
mgi.report.reader:Read Mouse Genome Informatics Reports
Provides readers for easy and consistent importing of Mouse Genome Informatics (MGI) report files: <https://www.informatics.jax.org/downloads/reports/index.html>. These data are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ, Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.
Authors:
mgi.report.reader_0.1.2.tar.gz
mgi.report.reader_0.1.2.tar.gz(r-4.5-noble)mgi.report.reader_0.1.2.tar.gz(r-4.4-noble)
mgi.report.reader_0.1.2.tgz(r-4.4-emscripten)mgi.report.reader_0.1.2.tgz(r-4.3-emscripten)
mgi.report.reader.pdf |mgi.report.reader.html✨
mgi.report.reader/json (API)
NEWS
# Installmgi.report.reader in R: |
install.packages('mgi.report.reader',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/patterninstitute/mgi.report.reader/issues
- feature_type_definitions - Genome Feature Type Definitions
- reports - Supported MGI reports
Last updated 6 hours agofrom:eb5591a012
Exports:chromosomesconvert_to_marker_idfeature_typesmarker_typesopen_marker_in_mgiread_reportreport_filereport_last_modifiedreport_namereport_sourcereport_typereport_urlupdate_marker_symbol
Dependencies:askpassbitbit64clicpp11crayoncurldata.tabledplyrfansigenericsgluehmshttr2lifecyclemagrittropensslpillarpkgconfigprettyunitsprogressR6rappdirsrlangstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Mouse chromosomes | chromosomes |
Convert marker symbols to updated marker identifiers | convert_to_marker_id |
Genome Feature Type Definitions | feature_type_definitions |
Genome Feature types | feature_types |
Genetic marker types | marker_types |
Browse MGI markers online | open_marker_in_mgi |
Read an MGI report | read_report |
Report last modification date | report_last_modified |
Report source | report_source |
Get MGI report specs by report key | report-attributes report_file report_name report_type report_url |
Supported MGI reports | reports |
Update marker symbols | update_marker_symbol |