Package: mgi.report.reader 0.1.2

Ramiro Magno

mgi.report.reader:Read Mouse Genome Informatics Reports

Provides readers for easy and consistent importing of Mouse Genome Informatics (MGI) report files: <https://www.informatics.jax.org/downloads/reports/index.html>. These data are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ, Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.

Authors:Ramiro Magno [aut, cre], David Shaw [aut], Isabel Duarte [aut], Ismail Gbadamosi [aut], Ali Jawaid [aut], Nencki Institute of Experimental Biology [fnd], University of Algarve [fnd], The Jackson Laboratory [fnd], Pattern Institute [cph, fnd]

mgi.report.reader_0.1.2.tar.gz
mgi.report.reader_0.1.2.tar.gz(r-4.5-noble)mgi.report.reader_0.1.2.tar.gz(r-4.4-noble)
mgi.report.reader_0.1.2.tgz(r-4.4-emscripten)mgi.report.reader_0.1.2.tgz(r-4.3-emscripten)
mgi.report.reader.pdf |mgi.report.reader.html
mgi.report.reader/json (API)
NEWS

# Installmgi.report.reader in R:
install.packages('mgi.report.reader',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/patterninstitute/mgi.report.reader/issues

Datasets:

13 exports 0.23 score 34 dependencies 108 downloads

Last updated 6 hours agofrom:eb5591a012

Exports:chromosomesconvert_to_marker_idfeature_typesmarker_typesopen_marker_in_mgiread_reportreport_filereport_last_modifiedreport_namereport_sourcereport_typereport_urlupdate_marker_symbol

Dependencies:askpassbitbit64clicpp11crayoncurldata.tabledplyrfansigenericsgluehmshttr2lifecyclemagrittropensslpillarpkgconfigprettyunitsprogressR6rappdirsrlangstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Mouse chromosomeschromosomes
Convert marker symbols to updated marker identifiersconvert_to_marker_id
Genome Feature Type Definitionsfeature_type_definitions
Genome Feature typesfeature_types
Genetic marker typesmarker_types
Browse MGI markers onlineopen_marker_in_mgi
Read an MGI reportread_report
Report last modification datereport_last_modified
Report sourcereport_source
Get MGI report specs by report keyreport-attributes report_file report_name report_type report_url
Supported MGI reportsreports
Update marker symbolsupdate_marker_symbol