Package: lme4breeding 1.0.22
Giovanny Covarrubias-Pazaran
lme4breeding:Relationship-Based Mixed-Effects Models
Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the 'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Authors:
lme4breeding_1.0.22.tar.gz
lme4breeding_1.0.22.tar.gz(r-4.5-noble)lme4breeding_1.0.22.tar.gz(r-4.4-noble)
lme4breeding_1.0.22.tgz(r-4.4-emscripten)lme4breeding_1.0.22.tgz(r-4.3-emscripten)
lme4breeding.pdf |lme4breeding.html✨
lme4breeding/json (API)
| # Installlme4breeding in R: |
| install.packages('lme4breeding',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- A_example - Broad sense heritability calculation.
- A_gryphon - Gryphon data from the Journal of Animal Ecology
- A_ige - Data to fit indirect genetic effects.
- DT_augment - DT_augment design example.
- DT_btdata - Blue Tit Data for a Quantitative Genetic Experiment
- DT_cornhybrids - Corn crosses and markers
- DT_cpdata - Genotypic and Phenotypic data for a CP population
- DT_example - Broad sense heritability calculation.
- DT_expdesigns - Data for different experimental designs
- DT_fulldiallel - Full diallel data for corn hybrids
- DT_gryphon - Gryphon data from the Journal of Animal Ecology
- DT_h2 - Broad sense heritability calculation.
- DT_halfdiallel - Half diallel data for corn hybrids
- DT_ige - Data to fit indirect genetic effects.
- DT_legendre - Simulated data for random regression
- DT_mohring - Full diallel data for corn hybrids
- DT_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- DT_rice - Rice lines dataset
- DT_sleepstudy - Reaction times in a sleep deprivation study
- DT_technow - Genotypic and Phenotypic data from single cross hybrids
- DT_wheat - Wheat lines dataset
- DT_yatesoats - Yield of oats in a split-block experiment
- DTi_cornhybrids - Corn crosses and markers
- GT_cornhybrids - Corn crosses and markers
- GT_cpdata - Genotypic and Phenotypic data for a CP population
- GT_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- GT_rice - Rice lines dataset
- GT_wheat - Wheat lines dataset
- GTn_rice - Rice lines dataset
- MP_cpdata - Genotypic and Phenotypic data for a CP population
- MP_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- Md_technow - Genotypic and Phenotypic data from single cross hybrids
- Mf_technow - Genotypic and Phenotypic data from single cross hybrids
- P_gryphon - Gryphon data from the Journal of Animal Ecology
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 days agofrom:07866793e5
Exports:A.matadd.diallel.varsadjBetaatcg1234bbasisbuild.HMMcoercefittedgetMMEimputevleglmebreedoverlayranefredmmresidualsrrmsmmstackTraittpsumat
Dependencies:bootcrayonlatticelme4MASSMatrixminqanlmenloptrRcppRcppEigen
Fitting genotype by environment models in lme4breeding
Rendered fromlmebreed.gxe.Rmdusingknitr::rmarkdownon Jun 28 2024.Last update: 2024-06-28
Started: 2024-05-18
Quantitative genetics using the lme4breeding package
Rendered fromlmebreed.qg.Rmdusingknitr::rmarkdownon Jun 28 2024.Last update: 2024-06-28
Started: 2024-05-18
