Package: gggenomes 1.0.0

Thomas Hackl

gggenomes:A Grammar of Graphics for Comparative Genomics

An extension of 'ggplot2' for creating complex genomic maps. It builds on the power of 'ggplot2' and 'tidyverse' adding new 'ggplot2'-style geoms & positions and 'dplyr'-style verbs to manipulate the underlying data. It implements a layout concept inspired by 'ggraph' and introduces tracks to bring tidiness to the mess that is genomics data.

Authors:Thomas Hackl [aut, cre], Markus J. Ankenbrand [aut], Bart van Adrichem [aut], Kristina Haslinger [ctb, sad]

gggenomes_1.0.0.tar.gz
gggenomes_1.0.0.tar.gz(r-4.5-noble)gggenomes_1.0.0.tar.gz(r-4.4-noble)
gggenomes_1.0.0.tgz(r-4.4-emscripten)gggenomes_1.0.0.tgz(r-4.3-emscripten)
gggenomes.pdf |gggenomes.html✨
gggenomes/json (API)

Peer review:

Bug tracker:https://github.com/thackl/gggenomes/issues

127 exports 0.09 score 49 dependencies

Last updated 7 days agofrom:4196a3ec4b

Exports:%<>%%>%add_classadd_clustersadd_featsadd_linksadd_seqsadd_subfeatsadd_sublinksas_featsas_linksas_seqsas_subfeatsas_sublinksbinscheck_strandcombine_strandsdef_formatsdef_namesdef_typesdrop_feat_layoutdrop_layoutdrop_link_layoutdrop_seq_layoutexfeatsfeats0flipflip_seqsflip_strandfocusgenesgeom_bin_labelgeom_coveragegeom_featgeom_feat_labelgeom_feat_notegeom_feat_taggeom_feat_textgeom_genegeom_gene_labelgeom_gene_notegeom_gene_taggeom_gene_textgeom_linkgeom_link_labelgeom_link_linegeom_seqgeom_seq_breakgeom_seq_labelgeom_variantgeom_wiggleGeomFeatTextget_seqsgggenomeshas_varsif_reversein_rangeintroduceis_reverselabel_bplayoutlayout_genomeslayout_seqslinkslocatepickpick_by_treepick_seqspick_seqs_withinposition_pileposition_sixframeposition_strandposition_strandpileposition_variantPositionPilePositionSixframePositionStrandPositionStrandpilepull_binspull_featspull_genespull_linkspull_seqspull_trackqcqwread_alitvread_bedread_blastread_contextread_fairead_featsread_gbkread_gff3read_linksread_pafread_seq_lenread_seqsread_subfeatsread_sublinksread_vcfrequire_varsscale_color_variantscale_shape_variantscale_x_bpseqsset_classset_seqsshiftsplit_bystrand_chrstrand_intstrand_lglstrip_classswap_ifswap_querysynctheme_gggenomes_cleantracktrack_idstrack_infounnest_exonsvars_trackwidthwidth0write_gff3

Dependencies:bitbit64clicliprcolorspacecpp11crayondplyrellipsisfansifarvergenericsggplot2gluegtablehmsisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalessnakecasestringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr