Package: RNAseqQC 0.2.0
RNAseqQC:Quality Control for RNA-Seq Data
Functions for semi-automated quality control of bulk RNA-seq data.
Authors:
RNAseqQC_0.2.0.tar.gz
RNAseqQC_0.2.0.tar.gz(r-4.5-noble)RNAseqQC_0.2.0.tar.gz(r-4.4-noble)
RNAseqQC_0.2.0.tgz(r-4.4-emscripten)RNAseqQC_0.2.0.tgz(r-4.3-emscripten)
RNAseqQC.pdf |RNAseqQC.html✨
RNAseqQC/json (API)
NEWS
# InstallRNAseqQC in R: |
install.packages('RNAseqQC',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/frederikziebell/rnaseqqc/issues
- T47D - The T47D cell line data of RNA-seq experiment GSE89888
- T47D_diff_testing - Differential expression results corresponding to the T47D data set.
Last updated 4 days agofrom:2594954b47
Exports:filter_genesget_gene_idmake_ddsmean_sd_plotplot_biotypesplot_chromosomeplot_geneplot_gene_detectionplot_library_complexityplot_loadingsplot_maplot_pcaplot_pca_scattersplot_sample_clusteringplot_sample_MAsplot_total_countsplot_within_level_sample_MAssave_plots_to_pdf
Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobcachemcirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurlDBIdbplyrDelayedArrayDESeq2digestdoParalleldplyrensembldbfansifarverfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesGetoptLongggplot2ggpointdensityggrepelGlobalOptionsgluegtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrpngProtGenericspurrrR6rappdirsRColorBrewerRcppRcppArmadilloRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalesshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc