Package: OneSampleMR 0.1.5

Tom Palmer

OneSampleMR:One Sample Mendelian Randomization and Instrumental Variable Analyses

Useful functions for one-sample (individual level data) Mendelian randomization and instrumental variable analyses. The package includes implementations of; the Sanderson and Windmeijer (2016) <doi:10.1016/j.jeconom.2015.06.004> conditional F-statistic, the multiplicative structural mean model Hernán and Robins (2006) <doi:10.1097/01.ede.0000222409.00878.37>, and two-stage predictor substitution and two-stage residual inclusion estimators explained by Terza et al. (2008) <doi:10.1016/j.jhealeco.2007.09.009>.

Authors:Tom Palmer [aut, cre], Wes Spiller [aut], Eleanor Sanderson [aut]

OneSampleMR_0.1.5.tar.gz
OneSampleMR_0.1.5.tar.gz(r-4.5-noble)OneSampleMR_0.1.5.tar.gz(r-4.4-noble)
OneSampleMR_0.1.5.tgz(r-4.4-emscripten)OneSampleMR_0.1.5.tgz(r-4.3-emscripten)
OneSampleMR.pdf |OneSampleMR.html✨
OneSampleMR/json (API)
NEWS

# InstallOneSampleMR in R:

install.packages('OneSampleMR',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/remlapmot/onesamplemr/issues

4 exports 1 stars 0.36 score 68 dependencies 460 downloads

Last updated 9 days agofrom:50d73bdee5

Exports:fsw msmm tsps tsri

Dependencies:abind backports boot broom car carData cli colorspace cowplot cpp11 Deriv doBy dplyr expm fansi farver Formula generics ggplot2 glue gmm gtable isoband ivreg labeling lattice lifecycle lme4 lmtest magrittr MASS Matrix MatrixModels mgcv microbenchmark minqa modelr msm munsell mvtnorm nlme nloptr nnet numDeriv pbkrtest pillar pkgconfig purrr quantreg R6 RColorBrewer Rcpp RcppEigen rlang sandwich scales SparseM stringi stringr survival tibble tidyr tidyselect utf8 vctrs viridisLite withr zoo

Comparison fits of the multiplicative structural mean model

Rendered fromcompare-smm-fits.Rmdusingknitr::rmarkdownon Jun 27 2024.

Last update: 2024-06-14
Started: 2021-11-12

Comparison of conditional F-statistics

Rendered fromf-statistic-comparison.Rmdusingknitr::rmarkdownon Jun 27 2024.

Last update: 2024-06-14
Started: 2021-11-12

Citation

Readme and manuals

Help Manual

Help page	Topics
OneSampleMR: One Sample Mendelian Randomization and Instrumental Variable Analyses	OneSampleMR-package OneSampleMR onesamplemr
Additive structural mean model	asmm
Conditional F-statistic of Sanderson and Windmeijer (2016)	fsw fsw.ivreg
Multiplicative structural mean model	msmm
Summarizing MSMM Fits	print.msmm print.summary.msmm summary.msmm
Summarizing TSPS Fits	print.summary.tsps print.tsps summary.tsps
Summarizing TSRI Fits	print.summary.tsri print.tsri summary.tsri
Two-stage predictor substitution (TSPS) estimators	tsps
Two-stage residual inclusion (TSRI) estimators	tsri