Package: KLINK 1.0.0
Magnus Dehli Vigeland
KLINK:Kinship Analysis with Linked Markers
A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.
Authors:
KLINK_1.0.0.tar.gz
KLINK_1.0.0.tar.gz(r-4.5-noble)KLINK_1.0.0.tar.gz(r-4.4-noble)
KLINK_1.0.0.tgz(r-4.4-emscripten)KLINK_1.0.0.tgz(r-4.3-emscripten)
KLINK.pdf |KLINK.html✨
KLINK/json (API)
NEWS
| # InstallKLINK in R: |
| install.packages('KLINK',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/magnusdv/klink/issues
- LINKAGEMAP - Built-in linkage map
- paternity - Dataset for a paternity case
Last updated 3 days agofrom:e82c9f827f
Exports:getLinkedPairslaunchApplinkedLRloadFamFilemarkerSummaryparseXMLrunKLINKwriteResult
Dependencies:base64encbigDbitopsbslibcachemclicolorspacecommonmarkcrayoncurldigestdplyrevaluatefansifarverfastmapfontawesomeforrelfsgenericsgluegthighrhtmltoolshtmlwidgetshttpuvjquerylibjsonlitejuicyjuicekinship2knitrlabelinglaterlatticelifecyclemagrittrmarkdownMatrixmemoisemimemunsellopenxlsxpedFamiliaspedmutpedprobrpedtoolspillarpkgconfigpromisesquadprogR6rappdirsRColorBrewerRcppreactablereactRribdrlangrmarkdownsassscalesshinyshinydashboardshinyjsslamsourcetoolsstringitibbletidyselecttinytexutf8V8vctrsverbalisrviridisLitewithrxfunxml2xtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Identify linked marker pairs | getLinkedPairs |
| Launch KLINK | launchApp runKLINK |
| Built-in linkage map | LINKAGEMAP |
| LR with pairwise linked markers | linkedLR |
| Load .fam file | loadFamFile |
| Generate table of marker data | markerSummary |
| Parse XML file associated with .fam file | parseXML |
| Dataset for a paternity case | paternity |
| Write data and results to Excel | writeResult |