Package: DGEAR 0.2.1
Koushik Bardhan
DGEAR: Differential Gene Expression Analysis with R
Analyses gene expression data derived from microarray experiments to detect differentially expressed genes (DEGs) by employing majority voting across five statistical models: Welch t-test, one-way ANOVA, Dunnett's test, Half's modified t-test, and the Wilcoxon-Mann-Whitney U-test. Combined p-values are computed with Fisher's method. Gene annotation is optional: users may supply a GEO SOFT annotation table or rely on row names directly. Boyer, R.S., Moore, J.S. (1991) <doi:10.1007/978-94-011-3488-0_5>.
Authors:
DGEAR_0.2.1.tar.gz
DGEAR_0.2.1.tar.gz(r-4.7-any)DGEAR_0.2.1.tar.gz(r-4.6-any)
DGEAR_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DGEAR/json (API)
| # Install 'DGEAR' in R: |
| install.packages('DGEAR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- gene_exp_data - A dataset containing gene expression data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:87ec997169. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 153 | ||
| source / vignettes | OK | 198 | ||
| linux-release-x86_64 | OK | 152 | ||
| wasm-release | OK | 155 |
Exports:DGEARperform_anovaperform_dunnett_testperform_h_testperform_t_testperform_wilcox_test
Dependencies:askpassbitbit64bootcellrangerclassclicliprcpp11crayoncurldata.tableDescToolse1071ExactexpmforcatsfsgldgluehavenhmshttrjsonlitelatticelifecyclelmommagrittrMASSMatrixmetapodmimemvtnormopensslpillarpkgconfigprettyunitsprogressproxyR6RcppreadrreadxlrematchrlangrootSolverstudioapisystibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Differential Gene Expression Analysis with R | DGEAR |
| A dataset containing gene expression data | gene_exp_data |
| One-Way ANOVA Test for Differential Gene Expression | perform_anova |
| Dunnett's Test for Differential Gene Expression | perform_dunnett_test |
| Half's Modified t-Test for Differential Gene Expression | perform_h_test |
| Welch Two-Sample t-Test for Differential Gene Expression | perform_t_test |
| Wilcoxon-Mann-Whitney U-Test for Differential Gene Expression | perform_wilcox_test |
