# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "wTO" in publications use:'
type: software
license: GPL-2.0-only
title: 'wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network'
version: '2.1'
identifiers:
- type: doi
  value: 10.32614/CRAN.package.wTO
abstract: Computes the Weighted Topological Overlap with positive and negative signs
  (wTO) networks given a data frame containing the mRNA count/ expression/ abundance
  per sample, and a vector containing the interested nodes of interaction (a subset
  of the elements of the full data frame). It also computes the cut-off threshold
  or p-value based on the individuals bootstrap or the values reshuffle per individual.
  It also allows the construction of a consensus network, based on multiple wTO networks.
  The package includes a visualization tool for the networks. More about the methodology
  can be found at <https://doi.org/10.1186/s12859-018-2351-7>.
authors:
- family-names: Gysi
  given-names: Deisy Morselli
  email: deisy.ccnr@gmail.com
- family-names: Gysi
  given-names: Deisy Morselli
- family-names: Voigt
  given-names: Andre
- family-names: Fragoso
  given-names: Tiago Miranda
- family-names: Almaas
  given-names: Eivind
- family-names: Nowick.
  given-names: Katja
preferred-citation:
  type: manual
  title: 'wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network'
  authors:
  - family-names: Morselli Gysi
    given-names: Deisy
  - family-names: Voigt
    given-names: Andre
  - family-names: Miranda Fragoso
    given-names: Tiago
    name-particle: de
  - family-names: Almaas
    given-names: Eivind
  - family-names: Nowick
    given-names: Katja
  year: '2024'
  notes: R package version 2.1
  url: https://CRAN.R-project.org/package=wTO
repository: https://cran.r-universe.dev
commit: 0c431a504419c4d47bac6c7aa4dc89958a716c34
date-released: '2024-07-05'
contact:
- family-names: Gysi
  given-names: Deisy Morselli
  email: deisy.ccnr@gmail.com
references:
- type: article
  title: 'wTO: Computing Weighted Topological Overlaps and Consensus wTO Network,
    an R package.'
  authors:
  - family-names: Morselli Gysi
    given-names: Deisy
  - family-names: Voigt
    given-names: Andre
  - family-names: Miranda Fragoso
    given-names: Tiago
    name-particle: de
  - family-names: Almaas
    given-names: Eivind
  - family-names: Nowick
    given-names: Katja
  year: '2018'
  journal: BMC Bioinformatics
  issn: 1471-2105
  doi: 10.1186/s12859-018-2351-7
  month: '10'
  volume: '19'
  issue: '1'
  url: https://doi.org/10.1186/s12859-018-2351-7
  start: '392'