Package: varitas
Type: Package
Title: Variant Calling in Targeted Analysis Sequencing Data
Version: 0.0.2
Date: 2020-11-03
Authors@R: c(
  person("Adam", "Mills", role = c("aut", "cre"), email = "Adam.Mills@icr.ac.uk"),
  person("Erle", "Holgersen", role = "aut"),
  person("Ros", "Cutts", role = "aut"),
  person("Syed", "Haider", role = "aut", email = "Syed.Haider@icr.ac.uk")
  )
Description: Multi-caller variant analysis pipeline for targeted
        analysis sequencing (TAS) data. Features a modular, automated
        workflow that can start with raw reads and produces a
        user-friendly PDF summary and a spreadsheet containing
        consensus variant information.
SystemRequirements: perl, bedtools (>=2.27.1), bwa
License: GPL-2
Suggests: testthat, knitr, rmarkdown, futile.logger
Imports: stringr, dplyr, yaml, openxlsx, VennDiagram, assertthat,
        magrittr, tools, utils, tidyr, doParallel, foreach
RoxygenNote: 6.1.1
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-07-06 08:21:08 UTC; root
Author: Adam Mills [aut, cre], Erle Holgersen [aut], Ros Cutts [aut],
        Syed Haider [aut]
Maintainer: Adam Mills <Adam.Mills@icr.ac.uk>
Config/pak/sysreqs: perl
Repository: https://cran.r-universe.dev
Date/Publication: 2020-11-13 23:30:03 UTC
RemoteUrl: https://github.com/cran/varitas
RemoteRef: HEAD
RemoteSha: 603e4ec1d6d90678eb54486f7a0faf6a76a14114