Package: topologyGSA
Version: 1.5.0
Date: 2023-09-25
Title: Gene Set Analysis Exploiting Pathway Topology
Author: Sofia Massa, Gabriele Sales
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>
Description: Using Gaussian graphical models we propose a novel
        approach to perform pathway analysis using gene expression.
        Given the structure of a graph (a pathway) we introduce two
        statistical tests to compare the mean and the concentration
        matrices between two groups. Specifically, these tests can be
        performed on the graph and on its connected components
        (cliques). The package is based on the method described in
        Massa M.S., Chiogna M., Romualdi C. (2010)
        <doi:10.1186/1752-0509-4-121>.
Imports: graph, gRbase (>= 2.0), qpgraph, fields, methods, igraph
Suggests: Rgraphviz
License: GPL-3
LazyLoad: yes
biocViews:
NeedsCompilation: no
Packaged: 2026-10-03 08:19:21 UTC; root
Config/pak/sysreqs: libbz2-dev liblzma-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2023-09-25 19:30:42 UTC
RemoteUrl: https://github.com/cran/topologyGSA
RemoteRef: HEAD
RemoteSha: 68c5de177606a4fc304a133147664c13b5bc3f98