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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "tempted" in publications use:'
type: software
license: GPL-3.0-only
title: 'tempted: Temporal Tensor Decomposition, a Dimensionality Reduction Tool for
  Longitudinal Multivariate Data'
version: 0.1.2
doi: 10.1186/s13059-024-03453-x
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tempted
abstract: TEMPoral TEnsor Decomposition (TEMPTED), is a dimension reduction method
  for multivariate longitudinal data with varying temporal sampling. It formats the
  data into a temporal tensor and decomposes it into a summation of low-dimensional
  components, each consisting of a subject loading vector, a feature loading vector,
  and a continuous temporal loading function. These loadings provide a low-dimensional
  representation of subjects or samples and can be used to identify features associated
  with clusters of subjects or samples. TEMPTED provides the flexibility of allowing
  subjects to have different temporal sampling, so time points do not need to be binned,
  and missing time points do not need to be imputed.
authors:
- family-names: Shi
  given-names: Pixu
  email: pixu.shi@duke.edu
preferred-citation:
  type: article
  title: 'TEMPTED: time-informed dimensionality reduction for longitudinal microbiome
    studies'
  authors:
  - family-names: Shi
    given-names: Pixu
    email: pixu.shi@duke.edu
  - family-names: Martino
    given-names: Cameron
  - family-names: Han
    given-names: Rungang
  - family-names: Janssen
    given-names: Stefan
  - family-names: Buck
    given-names: Gregory
  - family-names: Serrano
    given-names: Myrna
  - family-names: Owzar
    given-names: Kouros
  - family-names: Knight
    given-names: Rob
  - family-names: Shenhav
    given-names: Liat
  - family-names: Zhang
    given-names: Anru R
  journal: Genome Biology
  year: '2024'
  volume: '25'
  issue: '1'
  doi: 10.1186/s13059-024-03453-x
  start: '317'
repository: https://cran.r-universe.dev
repository-code: https://github.com/pixushi/tempted
commit: 4f90ab6eb40b74cc515c7052f9a495ce88009772
url: https://github.com/pixushi/tempted
date-released: '2026-10-27'
contact:
- family-names: Shi
  given-names: Pixu
  email: pixu.shi@duke.edu