Version: 1.2.7
Date: 2021-11-27
Text: update URLs.

Version: 1.2.6
Date: 2020-09-24
Text: change modt.fun() to use limma::eBayes() rather than
        limma::ebayes().

Version: 1.2.5
Date: 2015-07-08
Text: added import statements required by R-devel.

Version: 1.2.4
Date: 2015-03-21
Text: fixed the "please use :: or requireNamespace() instead" warnings.

Version: 1.2.3
Date: 2014-11-14
Text: change of maintainer email address.

Version: 1.2.3
Date: 2014-11-14
Text: fixed the "no visible global function definition" warnings.

Version: 1.2.2
Date: 2014-04-18
Text: added import statement in NAMESPACE to address corresponding
        warnings in R 3.1.0.

Version: 1.2.1
Date: 2013-09-01
Text: package update necessary due to updated functions in sda version
        1.3.1. In particular, sda::centroids() and sda::catscore()
        functions now use shrinkage estimates of frequencies.
        Correspondingly, diffmean.fun(), studentt.fun(), samL1.R(),
        lait.R() efront.R() and cst.R() have been modified internally
        to continue to use empirical frequencies.  In addition,
        shrinkt.fun(), shrinkt.stat() and shrinkcat.stat() now have a
        new "lambda.freqs" option.

Version: 1.2.0
Date: 2012-12-04
Text: one-sample shrinkage CAT scores and paired shrinkage CAT scores
        are now implemented, as well as CAT scores with unequal
        variances. In addition, the regularization parameters lambda
        and lambda.var can now be specified.

Version: 1.2.0
Date: 2012-12-04
Text: similary, estimation of one-sample shrinkage t-scores and paired
        shrinkage t-scores is now available, as well as optional
        specification of lambda.var regularization parameter.

Version: 1.2.0
Date: 2012-12-04
Text: in addtion, computation of the paired student t statistics as
        well as student t scores with unequal variance is now possible.

Version: 1.1.8
Date: 2012-08-20
Text: changes to work with the updated centroids() and catscore()
        functions in sda version 1.2.2

Version: 1.1.7
Date: 2012-01-22
Text: NAMESPACE file added

Version: 1.1.6
Date: 2011-07-05
Text: small change in studentt.fun and diffmean.fun to avoid uncessary
        verbose output

Version: 1.1.5
Date: 2011-06-28
Text: small changes in the code needed to work with the modified
        centroids function from the sda package version 1.2.0

Version: 1.1.5
Date: 2011-06-28
Text: neighborhood options removed from shrinkcat.stat()

Version: 1.1.5
Date: 2011-06-28
Text: shrinkcat.stat() now uses catscore() function from sda package
        (this is much faster than the version previously implemented in
        "st")

Version: 1.1.4
Date: 2010-05-06
Text: added option "group.method".  Now groups are determined either by
        the correlation neighborhood (possibly overlapping groups) or
        by the clusters on the correlation graph (disjoint groups).

Version: 1.1.3
Date: 2009-05-10
Text: added option "group.thresh" to allow the specification of
        correlation neighborhoods around features and the computation
        of the grouped cat score.

Version: 1.1.2
Date: 2009-04-26
Text: correlation-shared t-statistic of Tibshirani and Wasserman (2006)
        added: new functions cst.stat() and cst.fun().

Version: 1.1.2
Date: 2009-04-26
Text: correlation-predicted t-statistic of Lai (2008) added: new
        functions lait.stat(), lait.fun() and lai.tscore().

Version: 1.1.1
Date: 2009-02-05
Text: rankprod.stat() and rankprod.fun() added for calculation of the
        two-sided rank products statistic.

Version: 1.1.1
Date: 2009-02-05
Text: reference to Zuber and Strimmer (2009) added.

Version: 1.1.1
Date: 2009-02-05
Text: small corrections in the help pages, to pass the more stringent
        checks on .Rd files introduced in R in January 2009.

Version: 1.1.0
Date: 2008-12-13
Text: new functions shrinkcat.stat() und shrinkcat.fun() implementing a
        shrinkage estimate of the "correlation-adjusted t-score"
        described in Zuber and Strimmer (2009).

Version: 1.1.0
Date: 2008-12-13
Text: part of the code was rewritten to share code with the "sda"
        package (exploiting the link between discriminant analysis and
        gene ranking).

Version: 1.0.3
Date: 2008-10-27
Text: the class labels can now be specified as arbitrary factors, the
        argument L is not any more restricted to be a vector containing
        only 1s and 2s.

Version: 1.0.2
Date: 2007-10-21
Text: some corrections and extensions have been made in the
        documentation, in particular, how to compute q-values and local
        FDR values

Version: 1.0.2
Date: 2007-10-21
Text: shrinkt() now returns a proper vector (one for which is.vector()
        is TRUE).

Version: 1.0.2
Date: 2007-10-21
Text: the license was changed from "GNU GPL 2 or later" to "GNU GPL 3
        or later".

Version: 1.0.1
Date: 2007-02-28
Text: reference to Opgen-Rhein and Strimmer (2007) updated.

Version: 1.0.1
Date: 2007-02-28
Text: updated email address

Version: 1.0.1
Date: 2007-02-28
Text: updated minimum R versions and version of corpcor package

Version: 1.0.0
Date: 2006-08-31
Category: This is the first standalone release (31 August 2006
Text:

Version: 1.0.0
Date: 2006-08-31
Category: This package implements the "shrinkage t" statistic described
Text:

Version: 1.0.0
Date: 2006-08-31
Category: in Opgen-Rhein and Strimmer (2007).  It also offers a
        convenient
Text:

Version: 1.0.0
Date: 2006-08-31
Category: interface to a number of other regularized t-type statistics
        often
Text:

Version: 1.0.0
Date: 2006-08-31
Category: used in high-dimensional case-control studies.
Text: