Package: spgs
Type: Package
Encoding: UTF-8
Title: Statistical Patterns in Genomic Sequences
Version: 1.0-4
Date: 2023-10-02
Authors@R: c(person("Andrew", "Hart", role = c("aut", "cre"), email = "ahart@dim.uchile.cl"),
  person("Servet", "Martínez", role = "aut"),
  person("Universidad de Chile", role = "cph"),
  person("INRIA-Chile", role = "cph"))
Author: Andrew Hart [aut, cre], Servet Martínez [aut], Universidad de
        Chile [cph], INRIA-Chile [cph]
Maintainer: Andrew Hart <ahart@dim.uchile.cl>
Copyright: Universidad de Chile, INRIA-Chile
Depends: R (>= 3.0)
Imports: graphics, stats
Enhances: seqinr
Description: A collection of statistical hypothesis tests and other
        techniques for identifying certain spatial
        relationships/phenomena in DNA sequences. In particular, it
        provides tests and graphical methods for determining whether or
        not DNA sequences comply with Chargaff's second parity rule or
        exhibit purine-pyrimidine parity. In addition, there are
        functions for efficiently simulating discrete state space
        Markov chains and testing arbitrary symbolic sequences of
        symbols for the presence of first-order Markovianness. Also, it
        has functions for counting words/k-mers (and cylinder patterns)
        in arbitrary symbolic sequences. Functions which take a DNA
        sequence as input can handle sequences stored as SeqFastadna
        objects from the 'seqinr' package.
License: GPL (>= 2)
NeedsCompilation: yes
Classification/MSC: 62F03, 62G10, 62M07, 62P10, 92D20
Packaged: 2026-06-23 20:33:21 UTC; root
Repository: https://cran.r-universe.dev
Date/Publication: 2023-10-03 15:31:22 UTC
RemoteUrl: https://github.com/cran/spgs
RemoteRef: HEAD
RemoteSha: 987257510f8b2a7ffe903d6b840021befbb4de58