Package: spacemodR
Title: Spatial Environmental Risk Assessment Through Food Webs
Version: 0.3.5
Authors@R: 
    c(person("Virgile", "Baudrot", email = "virgile.baudrot@qonfluens.com", role = c("aut", "cre", "cph")),
      person("Léa", "Bariod", email = "lea.bariod@univ-fcomte.fr", role = "ctb"),
      person("Clémentine", "Fritsch", email = "clementine.fritsch@univ-fcomte.fr", role = c("ctb", "cph")),
      person("Renaud", "Scheifler", email = "renaud.scheifler@univ-fcomte.fr", role = "ctb")
    )
Description: A workflow for spatially explicit environmental risk
        assessment of contaminated sites: habitat, food web, dispersal,
        exposure and risk. Starting from a raster of soil
        contamination, the package builds habitat layers for a set of
        species, organises them in a directed acyclic graph
        representing a food web, and propagates the flow of elements
        (e.g., food, energy, contaminants) along its links. It also
        provides soil interpolation by kriging, dispersal by kernel
        convolution or by circuit theory (through the optional 'Julia'
        package 'Omniscape'), land cover retrieval for France
        ('OCS-GE') and Europe ('EUNIS'), and Bayesian calibration of
        transfer models with 'Stan'.
License: MIT + file LICENSE
URL: https://github.com/Qonfluens/spacemodR,
        https://qonfluens.github.io/spacemodR/
BugReports: https://github.com/Qonfluens/spacemodR/issues
Imports: dplyr, ggplot2, httr, methods, patchwork, Rcpp (>= 0.12.0),
        rlang, rstan (>= 2.18.1), rstantools (>= 2.4.0), sf, terra,
        tools
Encoding: UTF-8
LazyData: true
Suggests: archive, knitr, rmarkdown, testthat (>= 3.0.0), JuliaCall,
        tidyterra, scales, purrr, quarto, tidyr, leaflet, gstat
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make, Julia (optional, for dispersal with
        'Omniscape')
Config/roxygen2/version: 8.0.0
NeedsCompilation: yes
Packaged: 2026-10-13 08:13:12 UTC; root
Author: Virgile Baudrot [aut, cre, cph], Léa Bariod [ctb], Clémentine
        Fritsch [ctb, cph], Renaud Scheifler [ctb]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Config/pak/sysreqs: make
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-12 19:10:08 UTC
RemoteUrl: https://github.com/cran/spacemodR
RemoteRef: HEAD
RemoteSha: 8039ec1584c28cde2a8c4fc541c9458492ac28f6