To cite package ‘shaman’ in publications use:

  Mendelson Cohen N, Olivares-Chauvet P, Lubling Y, Baran Y, Lifshitz
  A, Hoichman M, Tanay A (2017). “SHAMAN: bin-free randomization,
  normalization and screening of Hi-C matrices.” _bioRxiv_.
  doi:10.1101/187203 <https://doi.org/10.1101/187203>.
  <https://www.biorxiv.org/content/10.1101/187203v1>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{SHAMAN}: bin-free randomization, normalization and screening of {Hi-C} matrices},
    author = {Netta {Mendelson Cohen} and Pedro Olivares-Chauvet and Yaniv Lubling and Yael Baran and Aviezer Lifshitz and Michael Hoichman and Amos Tanay},
    journal = {bioRxiv},
    year = {2017},
    doi = {10.1101/187203},
    url = {https://www.biorxiv.org/content/10.1101/187203v1},
  }