Package: shaman
Type: Package
Title: Sampling Hi-C Contact Matrices for Aparametric Normalization
Version: 2.1.1
Authors@R: c(person("Amos", "Tanay", role=c("aut")),
    person("Netta", "Mendelson Cohen", email="netta.mendelsoncohen@weizmann.ac.il",
    role=c("aut")),
    person("Aviezer", "Lifshitz", email="aviezer.lifshitz@weizmann.ac.il",
    role=c("aut", "cre")),
    person("Weizmann Institute of Science", role="cph"))
Description: Generate expected Hi-C (genome-wide chromosome
        conformation capture) data maintaining marginal coverage, and
        the decay in contact probability with increasing genomic
        distance. Expected Hi-C data is used for normalization and
        graphical presentation of statistical significance of observed
        Hi-C contact enrichments. The method is described in Mendelson
        Cohen et al. (2017) <doi:10.1101/187203>.
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
LinkingTo: Rcpp
SystemRequirements: C++17
Suggests: knitr, testthat, rmarkdown, Gviz, foreach
VignetteBuilder: rmarkdown, knitr
Depends: R (>= 4.0.0)
Imports: misha (>= 3.5.6), Rcpp (>= 0.12.11), RANN, data.table, ggplot2
        (>= 3.4.0), reshape2, grid, plyr, parallel
URL: https://tanaylab.github.io/shaman/,
        https://github.com/tanaylab/shaman
OS_type: unix
BugReports: https://github.com/tanaylab/shaman/issues
NeedsCompilation: yes
Packaged: 2026-10-18 14:50:28 UTC; root
Author: Amos Tanay [aut], Netta Mendelson Cohen [aut], Aviezer Lifshitz
        [aut, cre], Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-18 11:00:02 UTC
RemoteUrl: https://github.com/cran/shaman
RemoteRef: HEAD
RemoteSha: 92510db36749ea4cf6645235581f2fc54731ad4a