Package: serofoi
Title: Bayesian Estimation of the Force of Infection from Serological
        Data
Type: Package
Version: 1.0.3
Authors@R: c(
    person("Zulma M.", "Cucunubá", , "zulma.cucunuba@javeriana.edu.co", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8165-3198")),
    person("Nicolás", "T. Domínguez", , "ex-ntorres@javeriana.edu.co", role = "aut",
           comment = c(ORCID = "0009-0002-8484-1298")),
    person("Ben", "Lambert", role = "aut"),
    person("Pierre", "Nouvellet", role = "aut"),
    person("Geraldine", "Gómez", role = "ctb",
           comment = c(ORCID = "0009-0007-8701-0568")),
    person("Jaime A.", "Pavlich-Mariscal", role = "ctb",
           comment = c(ORCID = "0000-0002-3892-6680")),
    person("Hugo", "Gruson", role = "ctb",
           comment = c(ORCID = "0000-0002-4094-1476")),
    person("David Santiago", "Quevedo", role = "ctb",
           comment = c(ORCID = "0000-0003-1583-4262")),
    person("Miguel", "Gámez", role = "ctb"),
    person("Sumali", "Bajaj", role = "ctb"),
    person("Everlyn", "Kamau", role = "ctb"),
    person("Richard", "Creswell", role = "ctb"),
    person("International Development Research Center (IDRC)", role = "fnd"),
    person("Pontificia Universidad Javeriana", role = "cph")
  )
Description: Estimating the force of infection from time varying, age
        varying, or constant serocatalytic models from population based
        seroprevalence studies using a Bayesian framework, including
        data simulation functions enabling the generation of
        serological surveys based on this models. This tool also
        provides a flexible prior specification syntax for the force of
        infection and the seroreversion rate, as well as methods to
        assess model convergence and comparison criteria along with
        useful visualisation functions.
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/serofoi,
        https://epiverse-trace.github.io/serofoi/
BugReports: https://github.com/epiverse-trace/serofoi/issues
Depends: R (>= 4.1.0)
Imports: bayesplot, checkmate, config, cowplot, dplyr, ggplot2, glue,
        graphics, loo, expm, methods, purrr, Rcpp (>= 0.12.0), rstan
        (>= 2.18.1), rstantools (>= 2.3.1), stats, tibble, tidyr
Suggests: knitr, rlang, rmarkdown, scales, spelling, testthat (>=
        3.0.0)
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
VignetteBuilder: knitr
Biarch: true
Config/Needs/website: epiverse-trace/epiversetheme
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
NeedsCompilation: yes
RoxygenNote: 7.3.2
SystemRequirements: GNU make
Packaged: 2026-10-29 11:11:49 UTC; root
Author: Zulma M. Cucunubá [aut, cre]
        (<https://orcid.org/0000-0002-8165-3198>), Nicolás T. Domínguez
        [aut] (<https://orcid.org/0009-0002-8484-1298>), Ben Lambert
        [aut], Pierre Nouvellet [aut], Geraldine Gómez [ctb]
        (<https://orcid.org/0009-0007-8701-0568>), Jaime A.
        Pavlich-Mariscal [ctb]
        (<https://orcid.org/0000-0002-3892-6680>), Hugo Gruson [ctb]
        (<https://orcid.org/0000-0002-4094-1476>), David Santiago
        Quevedo [ctb] (<https://orcid.org/0000-0003-1583-4262>), Miguel
        Gámez [ctb], Sumali Bajaj [ctb], Everlyn Kamau [ctb], Richard
        Creswell [ctb], International Development Research Center
        (IDRC) [fnd], Pontificia Universidad Javeriana [cph]
Maintainer: Zulma M. Cucunubá <zulma.cucunuba@javeriana.edu.co>
Config/pak/sysreqs: make
Repository: https://cran.r-universe.dev
Date/Publication: 2025-03-31 10:40:55 UTC
RemoteUrl: https://github.com/cran/serofoi
RemoteRef: HEAD
RemoteSha: beb5bc6ffe34a1f391521a92e8193c240d9fa2e5