To cite sctransform in publications, please use:

Hafemeister, C. & Satija, R. Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression. Genome Biol 20, 296 (2019).

Choudhary, S. & Satija, R. Comparison and evaluation of statistical error models for scRNA-seq. Genome Biology 23, 1-20 (2022).

Corresponding BibTeX entries:

  @Article{,
    author = {Christoph Hafemeister and Rahul Satija},
    title = {Normalization and variance stabilization of single-cell
      RNA-seq data using regularized negative binomial regression},
    journal = {Genome Biology},
    year = {2019},
    volume = {20},
    pages = {296},
    doi = {10.1186/s13059-019-1874-1},
    url = {https://doi.org/10.1186/s13059-019-1874-1},
  }

  @Article{,
    author = {Saket Choudhary and Rahul Satija},
    title = {Comparison and evaluation of statistical error models for
      scRNA-seq},
    journal = {Genome Biology},
    year = {2022},
    volume = {23},
    pages = {20},
    doi = {10.1186/s13059-021-02584-9},
    url = {https://doi.org/10.1186/s13059-021-02584-9},
  }