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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scregclust" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'scregclust: Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq
  Data'
version: 0.1.10
doi: 10.1038/s41467-024-53954-3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.scregclust
- type: url
  value: https://github.com/scmethods/scregclust/
abstract: Implementation of the scregclust algorithm described in Larsson, Held, et
  al. (2024) <https://doi.org/10.1038/s41467-024-53954-3> which reconstructs regulatory
  programs of target genes in scRNA-seq data. Target genes are clustered into modules
  and each module is associated with a linear model describing the regulatory program.
authors:
- family-names: Held
  given-names: Felix
  email: felix.held@gmail.com
  orcid: https://orcid.org/0000-0002-7679-7752
- family-names: Larsson
  given-names: Ida
  email: ida.larsson@igp.uu.se
  orcid: https://orcid.org/0000-0001-5422-4243
- family-names: Nelander
  given-names: Sven
  email: sven.nelander@igp.uu.se
  orcid: https://orcid.org/0000-0003-1758-1262
preferred-citation:
  type: article
  title: Reconstructing the regulatory programs underlying the phenotypic plasticity
    of neural cancers
  authors:
  - family-names: Larsson
    given-names: Ida
    email: ida.larsson@igp.uu.se
    orcid: https://orcid.org/0000-0001-5422-4243
  - family-names: Held
    given-names: Felix
    email: felix.held@gmail.com
    orcid: https://orcid.org/0000-0002-7679-7752
  - family-names: Popova
    given-names: Gergana
  - family-names: Koc
    given-names: Alper
  - family-names: Kundu
    given-names: Soumi
  - family-names: Jörnsten
    given-names: Rebecka
  - family-names: Nelander
    given-names: Sven
    email: sven.nelander@igp.uu.se
    orcid: https://orcid.org/0000-0003-1758-1262
  journal: Nature Communications
  year: '2024'
  volume: '15'
  issue: '9699'
  doi: 10.1038/s41467-024-53954-3
repository: https://CRAN.R-project.org/package=scregclust
repository-code: https://github.com/scmethods/scregclust
url: https://scmethods.github.io/scregclust/
date-released: '2024-11-21'
contact:
- family-names: Held
  given-names: Felix
  email: felix.held@gmail.com
  orcid: https://orcid.org/0000-0002-7679-7752