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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "sccore" in publications use:'
type: software
license: GPL-3.0-only
title: 'sccore: Core Utilities for Single-Cell RNA-Seq'
version: 1.0.7
doi: 10.32614/CRAN.package.sccore
abstract: Core utilities for single-cell RNA-seq data analysis. Contained within are
  utility functions for working with differential expression (DE) matrices and count
  matrices, a collection of functions for manipulating and plotting data via 'ggplot2',
  and functions to work with cell graphs and cell embeddings. Graph-based methods
  include embedding kNN cell graphs into a UMAP <https://doi.org/10.21105/joss.00861>,
  collapsing vertices of each cluster in the graph, and propagating graph labels.
authors:
- family-names: Petukhov
  given-names: Viktor
  email: viktor.petukhov+gh@pm.me
- family-names: Rydbirk
  given-names: Rasmus
  email: rrydbirk@bmb.sdu.dk
- family-names: Kharchenko
  given-names: Peter
  email: peter_kharchenko@hms.harvard.edu
- family-names: Biederstedt
  given-names: Evan
  email: evan.biederstedt@gmail.com
repository: https://cran.r-universe.dev
repository-code: https://github.com/kharchenkolab/sccore
commit: 37ae6d1c7f85a162809995d36c6145036c9d8a35
url: https://github.com/kharchenkolab/sccore
date-released: '2026-04-06'
contact:
- family-names: Biederstedt
  given-names: Evan
  email: evan.biederstedt@gmail.com