# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "rtransparency" in publications use:'
type: software
license: GPL-3.0-only
title: 'rtransparency: Identifies Indicators of Transparency'
version: 1.0.0
abstract: Use this package to identify indicators of transparency within the published
  literature. It can identify and extract text related to indicators of transparency
  from specifically formatted TXT files and from PMC XML files (i.e. XML files downloaded
  from the PubMed Central). It builds on the original 'rtransparent' tool of Serghiou
  et al. (2021) <https://doi.org/10.1371/journal.pbio.3001107>.
authors:
- family-names: Serghiou
  given-names: Stylianos
  email: stelios.serghiou@gmail.com
- family-names: Sofi-Mahmudi
  given-names: Ahmad
  email: a.sofimahmudi@gmail.com
  orcid: https://orcid.org/0000-0001-6829-0823
preferred-citation:
  type: manual
  title: 'rtransparency: Identify Indicators of Transparency in the Biomedical Literature'
  authors:
  - family-names: Serghiou
    given-names: Stylianos
    email: stelios.serghiou@gmail.com
  - family-names: Sofi-Mahmudi
    given-names: Ahmad
    email: a.sofimahmudi@gmail.com
    orcid: https://orcid.org/0000-0001-6829-0823
  year: '2026'
  notes: R package version 1.0.0
  url: https://github.com/choxos/rtransparency
repository: https://cran.r-universe.dev
repository-code: https://github.com/choxos/rtransparency
commit: f791c3cb6f86391f5c9682921119f1e565da4fb2
url: https://choxos.github.io/rtransparency/
date-released: '2026-07-01'
contact:
- family-names: Sofi-Mahmudi
  given-names: Ahmad
  email: a.sofimahmudi@gmail.com
  orcid: https://orcid.org/0000-0001-6829-0823
references:
- type: article
  title: 'Assessment of transparency indicators across the biomedical literature:
    How open is open?'
  authors:
  - family-names: Serghiou
    given-names: Stylianos
  - family-names: Contopoulos-Ioannidis
    given-names: Despina G.
  - family-names: Boyack
    given-names: Kevin W.
  - family-names: Riedel
    given-names: Nico
  - family-names: Wallach
    given-names: Joshua D.
  - family-names: Ioannidis
    given-names: John P. A.
  journal: PLOS Biology
  year: '2021'
  volume: '19'
  issue: '3'
  doi: 10.1371/journal.pbio.3001107
  start: e3001107