NEWS

---

ridge 2014-3-02

• Fixed layout of .Rd files

  • Added deletion of Makevars to cleanup script

ridge 2012-9-27

• Flat text (.txt) data files were moved from ridge/data to ridge/inst/extdata (in the source, which becomes ridge/extdata in the installed package). The .txt files should be in inst/extdata because they files are used by the package examples (albeit in not run sections), as described in Writing R Extensions 1.1.5 Data in packages.

  • Some users were reporting problems installing the package on some Linux OS. configure has been modified to fix this problem.

ridge 2012-8-21

• Bug fix in src/commonFunctions.c

• Added configure.ac so that package will install if GSL >= 1.14 is not available (with linearRidgeGenotypes, logisticRidgeGenotypes, linearRidgeGenotypesPredict and logisticRidgeGenotypesPredict disabled).

  • configure.ac detects whether openblas is available and if it is found, links to that. This speeds up computation. (http://xianyi.github.com/OpenBLAS/)

ridge 2012-7-19

• fixed a bug in linearRidge when scaling = "none"

  • added functions linearRidgeGenotypes and logisticRidgeGenotypes and their predicting counterparts linearRidgeGenotypesPredict and logisticRidgeGenotypespredict. These functions fit linear and logistic ridge regression models for genome-wide SNP data, optionally automatically choosing the ridge parameter

    • minor bug fix: "Intercept" now prints as "(Intercept)" (as is the case for lm and glm models)

ridge 3.3 (2022-04-11)

• Fixed small bug with a unwanted print statement in linearRidge

ridge 3.2 (2022-02-21)

• Fixed issue with predict() function: Wrong results, when predicting the training data without newdata argument. When supplying them via newdata, everything seemed fine. (https://github.com/SteffenMoritz/ridge/issues/16) Thanks to Mekala Sundaram for reporting the issue.

ridge 3.1 (2022-02-07)

• Fixes to remain on CRAN

  • GitHub Actions as CI Tool

ridge 3.0 (2021-10-10)

• Fixes related to autoconf (needed for passing new CRAN checks)

ridge 2.6 (2020-09-02)

• Readme update

  • Fixes to pass CRAN checks

ridge 2.5 (2020-03-20)

• Fix predict bug with factor variables

  • Add vcov.ridgeLinear

  • Add testthat tests

  • Changed documentation partially to roxygen2

ridge 2.4 (2019-03-15)

• bugfix in logisticRidge and linearRidge see: https://github.com/SteffenMoritz/ridge/issues/2

  • bugfix to pass cran checks 'warning: missing template: HAVE_GSL_HEADER autoheader'

  • Updated Readme

ridge 2.3 (2018-07-26)

• Some fixed to remain on CRAN and comly with CRAN policy

  • Improved Description file

  • Changed NEWS file to markup document

ridge 2.2 (2017-02-27)

• Made package CRAN ready again

  • Created github repository for the package

  • Fixed warning using Wpendantic gcc

  • Adapted the DESCRIPTION file to latest CRAN requirements

  • Renamed CHANGELOG to NEWS

  • NEWS template update

  • Changes to .C Method registration

  • NAMESPACE fixes