Package: rchime Type: Package Title: Detect and Remove Chimeras from Amplicon Sequence Analysis Data Version: 0.1.0 Date: 2026-07-07 Authors@R: c( person("Sarah", "Westcott", , "swestcot@umich.edu", role = c("aut"), comment = c(ORCID = "0009-0001-1529-8247")), person("Pat", "Schloss", , "pschloss@umich.edu", role = c("cph", "cre"), comment = c(ORCID = "0000-0002-6935-4275")), person("Torbjorn", "Rognes", , "torognes@ifi.uio.no", role = c("cph")), person("Frederic", "Mahe", , "mahe@rhrk.uni-kl.de", role = c("cph")), person("Tomas", "Flouri", , "tomas.flouri@h-its.org", role = c("cph")), person("Christopher", "Quince", , "c.quince@warwick.ac.uk", role = c("cph")), person("Ben", "Nichols", , "b.nichols.1@research.gla.ac.uk", role = c("cph"))) Maintainer: Pat Schloss Description: Detect and remove chimeras from your amplicon sequence analysis using reference-based or de novo approaches. The 'rchime' package implements the 'VSEARCH' algorithms described in Rognes et al. (2016) . 'VSEARCH' builds on the work of Edgar,R.C. et al. (2011) . URL: https://github.com/mothur/rchime, https://mothur.org/rchime/ BugReports: https://github.com/mothur/rchime/issues License: GPL (>= 3) Config/testthat/edition: 3 Imports: cli, parallelly, RcppThread, utils Depends: Rcpp, R (>= 4.5.0), strollur(>= 0.1.3) Suggests: knitr, rmarkdown, xml2, pak, testthat (>= 3.0.0) LinkingTo: Rcpp, RcppThread, RcppXsimd, cli Encoding: UTF-8 VignetteBuilder: knitr Config/roxygen2/version: 8.0.0 NeedsCompilation: yes Packaged: 2026-07-23 17:14:49 UTC; root Author: Sarah Westcott [aut] (ORCID: ), Pat Schloss [cph, cre] (ORCID: ), Torbjorn Rognes [cph], Frederic Mahe [cph], Tomas Flouri [cph], Christopher Quince [cph], Ben Nichols [cph] Repository: https://cran.r-universe.dev Date/Publication: 2026-07-23 14:20:02 UTC RemoteUrl: https://github.com/cran/rchime RemoteRef: HEAD RemoteSha: 5bb9e1c29e4e11f0ac7fd041d2b5f4ca1224d55a