Package: r2sbml Type: Package Title: Read 'SBML' Models and Convert Them to Simulation Code Version: 0.1.0 Authors@R: c( person(given = "Satyaprakash", family = "Nayak", role = c("aut", "cre", "cph"), email = "satyaprakash.nayak@gmail.com"), person(given = "Sarah M.", family = "Keating", role = "ctb", comment = "Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp"), person(given = "Frank T.", family = "Bergmann", role = "ctb", comment = "Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp"), person(given = "Lucian P.", family = "Smith", role = "ctb", comment = "Author of 'libSBML'"), person(given = "Brett G.", family = "Olivier", role = "ctb", comment = "Author of 'libSBML'"), person(given = "Akiya", family = "Jouraku", role = "ctb", comment = "Author of 'libSBML'"), person(given = "Michael", family = "Hucka", role = "ctb", comment = "Author of 'libSBML'"), person(given = "Ben", family = "Bornstein", role = "ctb", comment = "Author of 'libSBML'"), person(given = "Jeroen", family = "Ooms", role = "ctb", comment = "Windows build support"), person(given = "California Institute of Technology", role = "cph", comment = "Copyright holder of 'libSBML', 2002-2020"), person(given = "EMBL European Bioinformatics Institute", role = "cph", comment = "Copyright holder of 'libSBML', 2009-2018"), person(given = "University of Heidelberg", role = "cph", comment = "Copyright holder of 'libSBML', 2013-2020"), person(given = "University College London", role = "cph", comment = "Copyright holder of 'libSBML', 2020"), person(given = "Japan Science and Technology Agency", role = "cph", comment = "Copyright holder of 'libSBML', 2002-2005"), person(given = "Gilles", family = "Vollant", role = "cph", comment = "Author of MiniZip, bundled with 'libSBML'"), person(given = "Mathias", family = "Svensson", role = "cph", comment = "Contributor to MiniZip, bundled with 'libSBML'"), person(given = "Even", family = "Rouault", role = "cph", comment = "Contributor to MiniZip, bundled with 'libSBML'"), person(given = "Nathan", family = "Moinvaziri", role = "cph", comment = "Contributor to MiniZip, bundled with 'libSBML'"), person(given = "Terry", family = "Thorsen", role = "cph", comment = "Contributor to MiniZip, bundled with 'libSBML'"), person(given = "Info-ZIP", role = "cph", comment = "Copyright holder of encryption code in MiniZip, bundled with 'libSBML'"), person(given = "Ludwig", family = "Schwardt", role = "cph", comment = "Author of the zlib iostream wrappers bundled with 'libSBML'"), person(given = "Kevin", family = "Ruland", role = "cph", comment = "Author of the zlib iostream wrappers bundled with 'libSBML'"), person(given = "M. Petra", family = "Baranski", role = "cph", comment = "Author of 'maddy', bundled with 'libSBML'"), person(given = "Tim", family = "Gromeyer", role = "cph", comment = "Author of 'html2md', bundled with 'libSBML'")) Description: Reads models in the Systems Biology Markup Language ('SBML') (Hucka et al. (2003) ) through the bundled 'libSBML' library (Bornstein et al. (2008) ). Lists a model's species, parameters, compartments, reactions, rules, events and function definitions, and converts the model into ready-to-run simulation code for 'deSolve', 'mrgsolve', 'rxode2', 'MATLAB', 'Julia' or 'ubiquity'. Models are read, not modified. URL: https://sn248.github.io/r2sbml/, https://github.com/sn248/r2sbml BugReports: https://github.com/sn248/r2sbml/issues Encoding: UTF-8 Language: en-GB License: GPL (>= 2) Copyright: See file inst/COPYRIGHTS Imports: Rcpp (>= 0.12.6) Suggests: deSolve, knitr, mrgsolve, rmarkdown, rxode2, testthat (>= 3.0.0), ubiquity VignetteBuilder: knitr LinkingTo: Rcpp Biarch: TRUE SystemRequirements: cmake, libxml2, libbz2 Config/roxygen2/version: 8.1.1 NeedsCompilation: yes Packaged: 2026-11-03 23:53:26 UTC; root Author: Satyaprakash Nayak [aut, cre, cph], Sarah M. Keating [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Frank T. Bergmann [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Lucian P. Smith [ctb] (Author of 'libSBML'), Brett G. Olivier [ctb] (Author of 'libSBML'), Akiya Jouraku [ctb] (Author of 'libSBML'), Michael Hucka [ctb] (Author of 'libSBML'), Ben Bornstein [ctb] (Author of 'libSBML'), Jeroen Ooms [ctb] (Windows build support), California Institute of Technology [cph] (Copyright holder of 'libSBML', 2002-2020), EMBL European Bioinformatics Institute [cph] (Copyright holder of 'libSBML', 2009-2018), University of Heidelberg [cph] (Copyright holder of 'libSBML', 2013-2020), University College London [cph] (Copyright holder of 'libSBML', 2020), Japan Science and Technology Agency [cph] (Copyright holder of 'libSBML', 2002-2005), Gilles Vollant [cph] (Author of MiniZip, bundled with 'libSBML'), Mathias Svensson [cph] (Contributor to MiniZip, bundled with 'libSBML'), Even Rouault [cph] (Contributor to MiniZip, bundled with 'libSBML'), Nathan Moinvaziri [cph] (Contributor to MiniZip, bundled with 'libSBML'), Terry Thorsen [cph] (Contributor to MiniZip, bundled with 'libSBML'), Info-ZIP [cph] (Copyright holder of encryption code in MiniZip, bundled with 'libSBML'), Ludwig Schwardt [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), Kevin Ruland [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), M. Petra Baranski [cph] (Author of 'maddy', bundled with 'libSBML'), Tim Gromeyer [cph] (Author of 'html2md', bundled with 'libSBML') Maintainer: Satyaprakash Nayak Config/pak/sysreqs: cmake libbz2-dev libxml2-dev Repository: https://cran.r-universe.dev Date/Publication: 2026-11-03 21:15:54 UTC RemoteUrl: https://github.com/cran/r2sbml RemoteRef: HEAD RemoteSha: 5836b253576d6f6447a8819799102e6bd7119999