# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "prepR4pcm" in publications use:'
type: software
license: MIT
title: 'prepR4pcm: Prepare Data and Trees for Phylogenetic Comparative Methods'
version: 1.0.0
abstract: Reconcile species names across datasets and phylogenetic trees for comparative
  biology workflows. Identifies mismatches due to formatting differences, taxonomic
  synonymy, and spelling errors. Produces detailed reports documenting how each name
  was resolved, which taxonomic authority was used, and what remains unresolved. Supports
  exact matching, name normalisation, synonym resolution via local taxonomic databases,
  and fuzzy matching for likely typos. Detects taxonomic splits and lumps. For methodological
  context, see Nakagawa et al. (2026) <https://doi.org/10.32942/X2468Z>.
authors:
- family-names: Nakagawa
  given-names: Shinichi
  email: itchyshin@gmail.com
  orcid: https://orcid.org/0000-0002-7765-5182
- family-names: Ortega
  given-names: Santiago
- family-names: Mizuno
  given-names: Ayumi
- family-names: Santos
  given-names: Eduardo S.A.
- family-names: Lagisz
  given-names: Malgorzata
  orcid: https://orcid.org/0000-0002-3993-6127
- family-names: Jain
  given-names: Bhavya
- family-names: Celeste
  given-names: Jimuel Jr
- family-names: Poo Hernandez
  given-names: Sergio
  email: pooherna@ualberta.ca
preferred-citation:
  type: manual
  title: 'prepR4pcm: Prepare Data and Trees for Phylogenetic Comparative Methods'
  authors:
  - family-names: Nakagawa
    given-names: Shinichi
    email: itchyshin@gmail.com
    orcid: https://orcid.org/0000-0002-7765-5182
  - family-names: Ortega
    given-names: Santiago
  - family-names: Mizuno
    given-names: Ayumi
  - family-names: Santos
    given-names: Eduardo S.A.
  - family-names: Lagisz
    given-names: Malgorzata
    orcid: https://orcid.org/0000-0002-3993-6127
  - family-names: Jain
    given-names: Bhavya
  - family-names: Celeste
    given-names: Jimuel Jr
  - family-names: Poo Hernandez
    given-names: Sergio
    email: pooherna@ualberta.ca
  year: '2026'
  notes: R package version 1.0.0
  url: https://github.com/itchyshin/prepR4pcm
repository: https://cran.r-universe.dev
repository-code: https://github.com/itchyshin/prepR4pcm
commit: b78fe29addf5d4cf917c17b421e31a2348ed37d8
url: https://itchyshin.github.io/prepR4pcm/
date-released: '2026-06-16'
contact:
- family-names: Nakagawa
  given-names: Shinichi
  email: itchyshin@gmail.com
  orcid: https://orcid.org/0000-0002-7765-5182