# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "poolfstat" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele
  Count or Pool-Seq Read Count Data'
version: 3.0.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.poolfstat
abstract: Functions for the computation of F-, f- and D-statistics (e.g., Fst, hierarchical
  F-statistics, Patterson's F2, F3, F3*, F4 and D parameters) in population genomics
  studies from allele count or Pool-Seq read count data and for the fitting, building
  and visualization of admixture graphs. The package also includes several utilities
  to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files
  or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion
  to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of
  version 2.0, the package also includes utilities to manipulate standard allele count
  data (e.g., stored in TreeMix, BayPass and SelEstim format).
authors:
- family-names: Gautier
  given-names: Mathieu
  email: mathieu.gautier@inrae.fr
preferred-citation:
  type: article
  title: Estimating hierarchical F-statistics from Pool-Seq data
  authors:
  - family-names: M.
    given-names: Gautier
  - family-names: M.
    given-names: Coronado-Zamora
  - family-names: R.
    given-names: Vitalis
  journal: bioRxiv
  year: '2024'
repository: https://CRAN.R-project.org/package=poolfstat
date-released: '2024-11-23'
contact:
- family-names: Gautier
  given-names: Mathieu
  email: mathieu.gautier@inrae.fr
references:
- type: article
  title: f-statistics estimation and admixture graph construction with Pool-Seq or
    allele count data using the R package poolfstat
  authors:
  - family-names: M.
    given-names: Gautier
  - family-names: R.
    given-names: Vitalis
  - family-names: L.
    given-names: Flori
  - family-names: A.
    given-names: Estoup
  journal: Molecular Ecology Resources
  year: '2022'
  volume: '22'
  issue: '4'
  start: 1394-1416
- type: article
  title: Measuring genetic differentiation from Pool-seq data
  authors:
  - family-names: V.
    given-names: Hivert
  - family-names: R.
    given-names: Leblois
  - family-names: E.J.
    given-names: Petit
  - family-names: M.
    given-names: Gautier
  - family-names: R.
    given-names: Vitalis
  journal: Genetics
  year: '2018'
  volume: '210'
  issue: '1'
  start: 315-330