Package: phoenics
Type: Package
Title: Pathways Longitudinal and Differential Analysis in Metabolomics
Version: 0.6.1
Date: 2026-07-01
Depends: R (>= 4.0.0)
Imports: lme4, blme, tibble, FactoMineR, factoextra, tidyr, stats
Suggests: knitr, KEGGREST
Authors@R: c(person("Camille", "Guilmineau", role = "aut", 
                    email = "camille.guilmineau@inrae.fr"),
             person("Remi", "Servien", role = c("aut", "cre"),
                    email = "remi.servien@inrae.fr",
                    comment = c(ORCID = "0000-0003-1270-1843")),
             person("Nathalie", "Vialaneix", role = "aut", 
                    email = "nathalie.vialaneix@inrae.fr",
                    comment = c(ORCID = "0000-0003-1156-0639")))
Maintainer: Remi Servien <remi.servien@inrae.fr>
Description: Perform a differential analysis at pathway level based on
        metabolite quantifications and information on pathway
        metabolite composition. The method, described in Guilmineau et
        al (2025) <doi:10.1186/s12859-025-06118-z> is based on a
        Principal Component Analysis step and on a linear mixed model.
        Automatic query of metabolic pathways is also implemented.
License: GPL-3
BugReports: https://forge.inrae.fr/panoramics/phoenics/-/issues
Encoding: UTF-8
NeedsCompilation: no
URL: https://forge.inrae.fr/panoramics/phoenics
LazyData: true
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Language: en-US
Packaged: 2026-07-02 21:43:41 UTC; root
Author: Camille Guilmineau [aut], Remi Servien [aut, cre] (ORCID:
        <https://orcid.org/0000-0003-1270-1843>), Nathalie Vialaneix
        [aut] (ORCID: <https://orcid.org/0000-0003-1156-0639>)
Repository: https://cran.r-universe.dev
Date/Publication: 2026-07-02 03:20:09 UTC
RemoteUrl: https://github.com/cran/phoenics
RemoteRef: HEAD
RemoteSha: fb723851ca21661eb72106311431b5bed6971fa7