NEWS

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origin 1.2.0 (2024-11-24)

Features

• Origin now supports .rmd (R-Markdown) and .qmd (Quarto) files. For originze_dir and originize_pkg, default remains to be .R files only. This can be changed by setting the filetypes argument or the origin.filetypes option. Thanks to @nathanhaigh for raising the issue
  #7.

origin 1.1.2 (2024-04-21)

Bugfix

• rstudioapi::sourceMarkers does not allow for HTML styling anymore since RStudio version 2023.03.0. See more about this here and here. Thanks for @Dschaykip raising this issue #6.

origin 1.1.1 (2023-09-03)

Bugfix

• Due to the change of R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS=true, a test now throws an error. This has been fixed in this new patch.

origin 1.1.0 (2022-11-02)

Features

• check_pkg_usage now allows for no provided packages, resulting in checking all standard R packages.
• enhanced print.pkg_usage() function. Using {cli} to properly style console outputs.
• ask_before_applying_changes now mutes all checks, i.e. a large number of files, local functions mask exported functions, and the presence and order of function conflicts, #4. Thanks to @Dschaykib for the feature request.

Bugfixes

• While originizing, recover strings that span multiple lines or exceed 1000 characters.
• Logging highlighting: missed functions are properly flagged and no flagging of namespaced functions.
• Functions exported by multiple packages are properly handled
• Methods called from RC/R6 classes via (instance$method()) are no longer flagged as functions.

origin 1.0.0 (2022-10-24)

This is a new release of origin with significant changes and improvements. It adds a complete new purpose by checking the actual usage of packages in a project. Under the hood, parsed code rather than regexes are used to originize code and check package usages.

Features

• The new function check_package_usage takes a directory that contains R files (sub directories included by default) and a vector of R package names. It checks

  • which (of the given) packages are used

  • which (of the given) packages are not used

  • possible namespace conflicts

  • which other packages are used via pkg::fct

  • used functions with unknown origin

    Note that check_package_usage does not look for packages that might have exported those functions, even if the missed package has been called via :: at another occasion in the same code.

This functionality makes it easy to quickly check a project for which packages are actually still needed when dealing with a huge barrage of library calls. Markers show where unspecified functions are called, either specifically via pkg:: or with completely unknown origin A detailed data.frame output, hidden under the custom print method, gives a deep dive of which functions are used how often.

origin 0.5.3 (2021-09-22)

• Fixed function documentation files to add missing Rd-tags
• Fixed the description field in the DESCRIPTION file to single quote 'RStudio'. Both fixes are to meet requirements to submit on CRAN.

origin 0.5.2

• Update package title.
• Fix the description field in the DESCRIPTION file to not quotes only where needed. Fixes are to meet requirements to submit on CRAN.
• Add a package documentation file.

origin 0.5.1

• Fix LICENSE file to contain the CRAN MIT license template only.
• Fix the description field in the DESCRIPTION file to not include quotes / backticks. Both fixes are to meet requirements to submit on CRAN.
• remove outdated pkgdown files.

origin 0.5.0

• Prepares origin for CRAN.
• The new function originize_pkg is designed to originize a package project. The main difference to originize_dir is that it automatically considers all packages listed in the DESCRIPTION file as Imports, Suggest, or Depends.
• Define an option/argument path_to_local_functions that allows the user to explicitly define a folder in which functions are defined that should be checked for masking exported functions (e.g. a custom mutate function).
• replace rprojroot functionalities by rstudioapi and a logic to determine the shared root path of all originized files to find local functions.
• Include a custom recursive function to get_local_functions. Before, it was possible that origin got stuck here due to referring to symlinks.
• Cease to export originize_text since it should be rarely used in practice directly but rather internally only.
• Write a vignette to make users familiar with origin.

origin 0.4.0

Bugfixes

• HTML-code in R scripts does no longer intervene with Markers output
• improve performance by excluding project library folders (renv/packrat) prior to list.files rather than afterwards
• add tests for originize_dir

origin 0.3.2

Bugfixes

• Improve performance by reducing checked functions for each script.
• @ not reasonable to occur prior to a function call

origin 0.3.1

New

• exclude renv / packrat files automatically
• export get_local_functions()

Bugfixes

• exclude_files did not work properly in originize_dir()

origin 0.3.0

New

• check for local function definitions that mask exported functions by using origin::get_local_functions(). It collects the names of all functions defined anywhere in the project, not just in the currently originized file(s). Those user defined functions have higher priority than any exported function. A message is triggered to inform the user

Chore

• rename special functions to the proper term infix functions.
  • Enhance argument descriptions in the addin originize_current_dir()

Bugfixes

• only consider R scripts for originizing via originize_dir()
  • extend infix function detection to containing any of the following tokens: % * ? ^ $ ( ) [ ] { } : = < >
  • handling of empty scripts. Misleading warning was triggered

origin 0.2.2

New

• do nothing if nothing is selected and run addin originize selection
• inform and ask user if many files are about to be originized
• function calls right after blanks or any of these tokens: , ; = & / - < > ~ ! | ? * ^ + ( [ {

Bugfixes

• considered default packages were only considered at the beginning of each session and not updated when new packages are added to the search list

origin 0.2.1

New

• enhance README with showcase gif, examples, reasoning and general usage of origin
• Typos in function descriptions

origin 0.2.0

New

• get default arguments from options()
• insert originized text where text was selected not where the cursor currently is

origin 0.1.0

• First stable Version