Encoding: UTF-8
Package: opentimsr
Type: Package
Title: An Open-Source Loader for Bruker's timsTOF Data Files
Version: 1.2.0
Date: 2026-09-24
Authors@R: 
    c(person(given="Michał Piotr",
             family="Startek",
             role=c("aut","cph"),
             email="michal.startek@mimuw.edu.pl",
             comment=c(ORCID="0000-0001-5227-3447")),
      person(given="Mateusz Krzysztof",
             family="Łącki",
             role=c("aut","cre","cph"),
             email="matteo.lacki@gmail.com",
             comment=c(ORCID="0000-0001-7415-4748")),
      person(given="mandreyel",
             role=c("ctb","cph"),
             comment="Author and copyright holder of the bundled 'mio' library (https://github.com/mandreyel/mio)")
    )
Maintainer: Mateusz Krzysztof Łącki <matteo.lacki@gmail.com>
Description: Reads raw data from Bruker's timsTOF mass spectrometers,
        stored in analysis.tdf and analysis.tdf_bin files inside .d
        folders. Frames can be selected by number or by retention time,
        and each peak is reported with its scan, time-of-flight index,
        intensity, mass-to-charge ratio and inverse ion mobility.
        Mass-to-charge ratios and ion mobilities are computed with
        built-in open-source calibration, or optionally with Bruker's
        proprietary library. See Łącki et al. (2021)
        <doi:10.1021/acs.jproteome.0c00962>.
License: MIT + file LICENSE
Copyright: See file inst/COPYRIGHTS
URL: https://github.com/michalsta/opentims
BugReports: https://github.com/michalsta/opentims/issues
Depends: R (>= 4.3.0)
Imports: Rcpp (>= 0.12.0), methods, DBI, RSQLite
LinkingTo: Rcpp
NeedsCompilation: yes
SystemRequirements: C++20, libzstd
Suggests: testthat (>= 3.0.0)
Config/roxygen2/version: 8.1.1
Packaged: 2026-10-22 15:37:13 UTC; root
Author: Michał Piotr Startek [aut, cph] (ORCID:
        <https://orcid.org/0000-0001-5227-3447>), Mateusz Krzysztof
        Łącki [aut, cre, cph] (ORCID:
        <https://orcid.org/0000-0001-7415-4748>), mandreyel [ctb, cph]
        (Author and copyright holder of the bundled 'mio' library
        (https://github.com/mandreyel/mio))
Config/pak/sysreqs: libzstd-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-22 10:00:08 UTC
RemoteUrl: https://github.com/cran/opentimsr
RemoteRef: HEAD
RemoteSha: 82141cd2b7dc1e77a85c8c0d1f5620266f90bec6