# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "nbTransmission" in publications use:'
type: software
license: MIT
title: 'nbTransmission: Naive Bayes Transmission Analysis'
version: 1.2.0
doi: 10.1093/ije/dyaa031
identifiers:
- type: doi
  value: 10.32614/CRAN.package.nbTransmission
abstract: Estimates the relative transmission probabilities between cases in an infectious
  disease outbreak or cluster using naive Bayes. Included are various functions to
  use these probabilities to estimate transmission parameters such as the generation/serial
  interval and reproductive number as well as finding the contribution of covariates
  to the probabilities and visualizing results. The ideal use is for an infectious
  disease dataset with metadata on the majority of cases but more informative data
  such as contact tracing or pathogen whole genome sequencing on only a subset of
  cases. For a detailed description of the methods see Leavitt et al. (2020) <https://doi.org/10.1093/ije/dyaa031>.
authors:
- family-names: Leavitt
  given-names: Sarah V
  email: sv1205@bu.edu
- family-names: Shapiro
  given-names: Anne
  email: anshap@bu.edu
preferred-citation:
  type: article
  title: Estimating the relative probability of direct transmission between infectious
    disease patients
  authors:
  - family-names: Leavitt
    given-names: Sarah V.
  - family-names: Lee
    given-names: Robyn S.
  - family-names: Sebastiani
    given-names: Paola
  - family-names: Horsburgh
    given-names: C Robert
  - family-names: Jenkins
    given-names: Helen E.
  - family-names: White
    given-names: Laura F
  journal: International Journal of Epidemiology
  url: https://doi.org/10.1093/ije/dyaa031
  volume: '49'
  issue: '3'
  year: '2020'
  doi: 10.1093/ije/dyaa031
repository: https://cran.r-universe.dev
repository-code: https://github.com/sarahleavitt/nbTransmission
commit: fb16333b025e9c09b9ddf3692f644562cda96459
url: https://sarahleavitt.github.io/nbTransmission/
date-released: '2025-05-14'
contact:
- family-names: Leavitt
  given-names: Sarah V
  email: sv1205@bu.edu