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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mpactr" in publications use:'
type: software
license: MIT
title: 'mpactr: Correction of Preprocessed MS Data'
version: 0.1.0
doi: 10.32614/CRAN.package.mpactr
abstract: 'An ''R'' implementation of the ''python'' program Metabolomics Peak Analysis
  Computational Tool (''MPACT'') (Robert M. Samples, Sara P. Puckett, and Marcy J.
  Balunas (2023) <https://doi.org/10.1021/acs.analchem.2c04632>). Filters in the package
  serve to address common errors in tandem mass spectrometry preprocessing, including:
  (1) isotopic patterns that are incorrectly split during preprocessing, (2) features
  present in solvent blanks due to carryover between samples, (3) features whose abundance
  is greater than user-defined abundance threshold in a specific group of samples,
  for example media blanks, (4) ions that are inconsistent between technical replicates,
  and (5) in-source fragment ions created during ionization before fragmentation in
  the tandem mass spectrometry workflow.'
authors:
- family-names: Mason
  given-names: Allison
  email: masonar@umich.edu
  orcid: https://orcid.org/0000-0003-1339-1592
- family-names: Johnson
  given-names: Gregory
  email: grejoh@umich.edu
- family-names: Schloss
  given-names: Patrick
  email: pschloss@umich.edu
  orcid: https://orcid.org/0000-0002-6935-4275
repository: https://CRAN.R-project.org/package=mpactr
repository-code: https://github.com/mums2/mpactr
url: https://mums2.github.io/mpactr/
date-released: '2024-09-10'
contact:
- family-names: Schloss
  given-names: Patrick
  email: pschloss@umich.edu
  orcid: https://orcid.org/0000-0002-6935-4275