# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "moire" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'moire: Multiplicity of Infection and Allele Frequency Recovery from Noisy
  Polyallelic Genetics Data'
version: 3.7.0
doi: 10.1093/bioinformatics/btae619
identifiers:
- type: url
  value: https://eppicenter.ucsf.edu/resources
abstract: A Markov Chain Monte Carlo (MCMC) based approach to Bayesian estimation
  of individual level multiplicity of infection, within host relatedness, and population
  allele frequencies from polyallelic genetic data. Implements the model described
  in Murphy and Greenhouse (2024) <https://doi.org/10.1093/bioinformatics/btae619>.
authors:
- family-names: Murphy
  given-names: Maxwell
  email: mm@maxmurphy.dev
  orcid: https://orcid.org/0000-0003-0332-4388
- family-names: Greenhouse
  given-names: Bryan
  email: bryan.greenhouse@ucsf.edu
  orcid: https://orcid.org/0000-0003-0287-9111
preferred-citation:
  type: article
  title: 'MOIRE: A software package for the estimation of allele frequencies and effective
    multiplicity of infection from polyallelic data'
  authors:
  - family-names: Murphy
    given-names: Maxwell
    email: mm@maxmurphy.dev
    orcid: https://orcid.org/0000-0003-0332-4388
  - family-names: Greenhouse
    given-names: Bryan
    email: bryan.greenhouse@ucsf.edu
    orcid: https://orcid.org/0000-0003-0287-9111
  journal: Bioinformatics
  year: '2024'
  month: '10'
  doi: 10.1093/bioinformatics/btae619
repository: https://cran.r-universe.dev
repository-code: https://github.com/EPPIcenter/moire
commit: b717be785713470103a250005aa5a67acbbc9266
url: https://eppicenter.github.io/moire/
date-released: '2026-09-26'
contact:
- family-names: Murphy
  given-names: Maxwell
  email: mm@maxmurphy.dev
  orcid: https://orcid.org/0000-0003-0332-4388