Package 'mlr3misc'

Description

Frequently used helper functions and assertions used in 'mlr3' and its companion packages. Comes with helper functions for functional programming, for printing, to work with 'data.table', as well as some generally useful 'R6' classes. This package also supersedes the package 'BBmisc'.

Author(s)

Maintainer: Marc Becker [email protected] (ORCID)

Authors:

• Michel Lang [email protected] (ORCID)

• Patrick Schratz [email protected] (ORCID)

See Also

Useful links:

• https://mlr3misc.mlr-org.com

• https://github.com/mlr-org/mlr3misc

• Report bugs at https://github.com/mlr-org/mlr3misc/issues

Description

This operator is equivalent to !(x %in% y).

Usage

x %nin% y

Arguments

Description

Convert object to a Callback or a list of Callback.

Usage

as_callback(x, ...)

## S3 method for class 'Callback'
as_callback(x, clone = FALSE, ...)

as_callbacks(x, clone = FALSE, ...)

## S3 method for class ''NULL''
as_callbacks(x, ...)

## S3 method for class 'list'
as_callbacks(x, clone = FALSE, ...)

## S3 method for class 'Callback'
as_callbacks(x, clone = FALSE, ...)

Arguments

Value

Callback.

Description

Converts a vector to a factor() and ensures that levels are in the order of the provided levels.

Usage

as_factor(x, levels, ordered = is.ordered(x))

Arguments

Value

(factor()).

Examples

x = factor(c("a", "b"))
y = factor(c("a", "b"), levels = c("b", "a"))

# x with the level order of y
as_factor(x, levels(y))

# y with the level order of x
as_factor(y, levels(x))

Description

This function is intended to be convert any R object to a short descriptive string, e.g. in base::print() functions.

The following rules apply:

• if x is atomic() with length 0 or 1: printed as-is.

• if x is atomic() with length greater than 1, x is collapsed with ",", and the resulting string is truncated to trunc_width characters.

• if x is an expression: converted to character.

• Otherwise: the class is printed.

If x is a list, the above rules are applied (non-recursively) to its elements.

Usage

as_short_string(x, width = 30L, num_format = "%.4g")

Arguments

Value

(character(1)).

Examples

as_short_string(list(a = 1, b = NULL, "foo", c = 1:10))

Description

Assertions for Callback class.

Usage

assert_callback(callback, null_ok = FALSE)

assert_callbacks(callbacks)

Arguments

Value

Callback | List of Callbacks.

Description

This assertion is intended to be called in active bindings of an R6::R6Class which does not allow assignment. If rhs is not missing, an exception is raised.

Usage

assert_ro_binding(rhs)

Arguments

Value

Nothing.

Description

Calls digest::digest() using the 'xxhash64' algorithm after applying hash_input to each object. To customize the hashing behaviour, you can overwrite hash_input for specific classes. For data.table objects, hash_input is applied to all columns, so you can overwrite hash_input for columns of a specific class. Objects that don't have a specific method are hashed as is.

Usage

calculate_hash(...)

Arguments

Value

(character(1)).

Examples

calculate_hash(iris, 1, "a")

Description

Callbacks allow to customize the behavior of processes in mlr3 packages. The following packages implement callbacks:

• CallbackOptimization in bbotk.

• CallbackTuning in mlr3tuning.

• CallbackTorch in mlr3torch

Details

Callback is an abstract base class. A subclass inherits from Callback and adds stages as public members. Names of stages should start with "on_". For each subclass a function should be implemented to create the callback. For an example on how to implement such a function see callback_optimization() in bbotk. Callbacks are executed at stages using the function call_back(). A Context defines which information can be accessed from the callback.

Public fields

Methods

Public methods

• Callback$new()

• Callback$format()

• Callback$print()

• Callback$help()

• Callback$call()

• Callback$clone()

Method new()

Creates a new instance of this R6 class.

Usage

Callback$new(id, label = NA_character_, man = NA_character_)

Arguments

Method format()

Helper for print outputs.

Usage

Callback$format(...)

Arguments

Method print()

Printer.

Usage

Callback$print(...)

Arguments

Method help()

Opens the corresponding help page referenced by field ⁠$man⁠.

Usage

Callback$help()

Method call()

Call the specific stage for a given context.

Usage

Callback$call(stage, context)

Arguments

Method clone()

The objects of this class are cloneable with this method.

Usage

Callback$clone(deep = FALSE)

Arguments

Examples

library(R6)

# implement callback subclass
CallbackExample = R6Class("CallbackExample",
  inherit = mlr3misc::Callback,
  public = list(
    on_stage_a = NULL,
    on_stage_b = NULL,
    on_stage_c = NULL
  )
)

Description

Takes a character vector and changes the first letter of each element to uppercase.

Usage

capitalize(str)

Arguments

Value

Character vector, same length as str.

Examples

capitalize("foo bar")

Description

Wrapper around base::cat() with a line break. Elements are converted to character and concatenate with base::paste0(). If a vector is passed, elements are collapsed with line breaks.

Usage

catn(..., file = "")

Arguments

Examples

catn(c("Line 1", "Line 2"))

Description

Calls find.package() to check if the all packages are installed.

Usage

check_packages_installed(
  pkgs,
  warn = TRUE,
  msg = "The following packages are required but not installed: %s"
)

Arguments

Value

(logical()) named with package names. TRUE if the respective package is installed, FALSE otherwise.

Examples

check_packages_installed(c("mlr3misc", "foobar"), warn = FALSE)

# catch warning
tryCatch(check_packages_installed(c("mlr3misc", "foobaaar")),
  packageNotFoundWarning = function(w) as.character(w))

Description

Chunk atomic vectors into parts of roughly equal size. chunk() takes a vector length n and returns an integer with chunk numbers. chunk_vector() uses base::split() and chunk() to split an atomic vector into chunks.

Usage

chunk_vector(x, n_chunks = NULL, chunk_size = NULL, shuffle = TRUE)

chunk(n, n_chunks = NULL, chunk_size = NULL, shuffle = TRUE)

Arguments

Value

chunk() returns a integer() of chunk indices, chunk_vector() a list() of integer vectors.

Examples

x = 1:11

ch = chunk(length(x), n_chunks = 2)
table(ch)
split(x, ch)

chunk_vector(x, n_chunks = 2)

chunk_vector(x, n_chunks = 3, shuffle = TRUE)

Description

Functions to retrieve callbacks from mlr_callbacks and set parameters in one go.

Usage

clbk(.key, ...)

clbks(.keys)

Arguments

See Also

Callback call_back

Description

map-like functions, similar to the ones implemented in purrr:

• map() returns the results of .f applied to .x as list. If .f is not a function, map will call [[ on all elements of .x using the value of .f as index.

• imap() applies .f to each value of .x (passed as first argument) and its name (passed as second argument). If .x does not have names, a sequence along .x is passed as second argument instead.

• pmap() expects .x to be a list of vectors of equal length, and then applies .f to the first element of each vector of .x, then the second element of .x, and so on.

• map_if() applies .f to each element of .x where the predicate .p evaluates to TRUE.

• map_at() applies .f to each element of .x referenced by .at. All other elements remain unchanged.

• keep() keeps those elements of .x where predicate .p evaluates to TRUE.

• discard() discards those elements of .x where predicate .p evaluates to TRUE.

• every() is TRUE if predicate .p evaluates to TRUE for each .x.

• some() is TRUE if predicate .p evaluates to TRUE for at least one .x.

• detect() returns the first element where predicate .p evaluates to TRUE.

• walk(), iwalk() and pwalk() are the counterparts to map(), imap() and pmap(), but just visit (or change by reference) the elements of .x. They return input .x invisibly.

Additionally, the functions map(), imap() and pmap() have type-safe variants with the following suffixes:

• ⁠*_lgl()⁠ returns a logical(length(.x)).

• ⁠*_int()⁠ returns a integer(length(.x)).

• ⁠*_dbl()⁠ returns a double(length(.x)).

• ⁠*_chr()⁠ returns a character(length(.x)).

• ⁠*_br()⁠ returns an object where the results of .f are put together with base::rbind().

• ⁠*_bc()⁠ returns an object where the results of .f are put together with base::cbind().

• ⁠*_dtr()⁠ returns a data.table::data.table() where the results of .f are put together in an base::rbind() fashion.

• ⁠*_dtc()⁠ returns a data.table::data.table() where the results of .f are put together in an base::cbind() fashion.

Usage

map(.x, .f, ...)

map_lgl(.x, .f, ...)

map_int(.x, .f, ...)

map_dbl(.x, .f, ...)

map_chr(.x, .f, ...)

map_br(.x, .f, ...)

map_bc(.x, .f, ...)

map_dtr(.x, .f, ..., .fill = FALSE, .idcol = NULL)

map_dtc(.x, .f, ...)

pmap(.x, .f, ...)

pmap_lgl(.x, .f, ...)

pmap_int(.x, .f, ...)

pmap_dbl(.x, .f, ...)

pmap_chr(.x, .f, ...)

pmap_dtr(.x, .f, ..., .fill = FALSE, .idcol = NULL)

pmap_dtc(.x, .f, ...)

imap(.x, .f, ...)

imap_lgl(.x, .f, ...)

imap_int(.x, .f, ...)

imap_dbl(.x, .f, ...)

imap_chr(.x, .f, ...)

imap_dtr(.x, .f, ..., .fill = FALSE, .idcol = NULL)

imap_dtc(.x, .f, ...)

keep(.x, .f, ...)

discard(.x, .p, ...)

map_if(.x, .p, .f, ...)

## Default S3 method:
map_if(.x, .p, .f, ...)

map_at(.x, .at, .f, ...)

every(.x, .p, ...)

some(.x, .p, ...)

detect(.x, .p, ...)

walk(.x, .f, ...)

iwalk(.x, .f, ...)

pwalk(.x, .f, ...)

Arguments

Description

Composes two or more functions into a single function. The returned function calls all provided functions in reverse order: The return value of the last function servers as input for the next to last function, and so on.

Usage

compose(...)

Arguments

Value

(⁠function()⁠) which calls the functions provided via ... in reverse order.

Examples

f = compose(function(x) x + 1, function(x) x / 2)
f(10)

Description

Computes the mode (most frequent value) of an atomic vector.

Usage

compute_mode(x, ties_method = "random", na_rm = TRUE)

Arguments

Value

(vector(1)): mode value.

Examples

compute_mode(c(1, 1, 1, 2, 2, 2, 3))
compute_mode(c(1, 1, 1, 2, 2, 2, 3), ties_method = "last")
compute_mode(c(1, 1, 1, 2, 2, 2, 3), ties_method = "random")

Description

Context objects allow Callback objects to access and modify data. The following packages implement context subclasses:

• ContextOptimization in bbotk.

• ContextEval in mlr3tuning.

• ContextTorch in mlr3torch

Details

Context is an abstract base class. A subclass inherits from Context. Data is stored in public fields. Access to the data can be restricted with active bindings (see example).

Public fields

Methods

Public methods

• Context$new()

• Context$format()

• Context$print()

• Context$clone()

Method new()

Creates a new instance of this R6 class.

Usage

Context$new(id, label = NA_character_)

Arguments

Method format()

Format object as simple string.

Usage

Context$format(...)

Arguments

Method print()

Print object.

Usage

Context$print()

Method clone()

The objects of this class are cloneable with this method.

Usage

Context$clone(deep = FALSE)

Arguments

Examples

library(data.table)
library(R6)

# data table with column x an y
data = data.table(x = runif(10), y = sample(c("A", "B"), 10, replace = TRUE))

# context only allows to access column y
ContextExample = R6Class("ContextExample",
  inherit = Context,
  public = list(
    data = NULL,

    initialize = function(data) {
        self$data = data
    }
  ),

  active = list(
    y = function(rhs) {
      if (missing(rhs)) return(self$data$y)
      self$data$y = rhs
    }
  )
)

context = ContextExample$new(data)

# retrieve content of column y
context$y

# change content of column y to "C"
context$y = "C"

Description

Same as sum(is.na(x)), but without the allocation.

Usage

count_missing(x)

Arguments

Value

(integer(1)) number of missing values.

Examples

count_missing(c(1, 2, NA, 4, NA))

Description

Put a function in a "lean" environment that does not carry unnecessary baggage with it (e.g. references to datasets).

Usage

crate(.fn, ..., .parent = topenv(parent.frame()), .compile = TRUE)

Arguments

Examples

meta_f = function(z) {
  x = 1
  y = 2
  crate(function() {
    c(x, y, z)
  }, x)
}
x = 100
y = 200
z = 300
f = meta_f(1)
f()

Description

A safe version of data.table::CJ() in case a column is called sorted or unique.

Usage

cross_join(dots, sorted = TRUE, unique = FALSE)

Arguments

Value

data.table::data.table().

Examples

cross_join(dots = list(sorted = 1:3, b = letters[1:2]))

Description

A key-value store for R6::R6 objects. On retrieval of an object, the following applies:

• If the object is a R6ClassGenerator, it is initialized with new().

• If the object is a function, it is called and must return an instance of a R6::R6 object.

• If the object is an instance of a R6 class, it is returned as-is.

Default argument required for construction can be stored alongside their constructors by passing them to ⁠$add()⁠.

S3 methods

• as.data.table(d)
  Dictionary -> data.table::data.table()
  Converts the dictionary to a data.table::data.table().

Public fields

Methods

Public methods

• Dictionary$new()

• Dictionary$format()

• Dictionary$print()

• Dictionary$keys()

• Dictionary$has()

• Dictionary$get()

• Dictionary$mget()

• Dictionary$add()

• Dictionary$remove()

• Dictionary$prototype_args()

• Dictionary$clone()

Method new()

Construct a new Dictionary.

Usage

Dictionary$new()

Method format()

Format object as simple string.

Usage

Dictionary$format(...)

Arguments

Method print()

Print object.

Usage

Dictionary$print()

Method keys()

Returns all keys which comply to the regular expression pattern. If pattern is NULL (default), all keys are returned.

Usage

Dictionary$keys(pattern = NULL)

Arguments

Returns

character() of keys.

Method has()

Returns a logical vector with TRUE at its i-th position if the i-th key exists.

Usage

Dictionary$has(keys)

Arguments

Returns

logical().

Method get()

Retrieves object with key key from the dictionary. Additional arguments must be named and are passed to the constructor of the stored object.

Usage

Dictionary$get(key, ..., .prototype = FALSE)

Arguments

Returns

Object with corresponding key.

Method mget()

Returns objects with keys keys in a list named with keys. Additional arguments must be named and are passed to the constructors of the stored objects.

Usage

Dictionary$mget(keys, ...)

Arguments

Returns

Named list() of objects with corresponding keys.

Method add()

Adds object value to the dictionary with key key, potentially overwriting a previously stored item. Additional arguments in ... must be named and are passed as default arguments to value during construction.

Usage

Dictionary$add(key, value, ..., .prototype_args = list())

Arguments

Returns

Dictionary.

Method remove()

Removes objects with from the dictionary.

Usage

Dictionary$remove(keys)

Arguments

Returns

Dictionary.

Method prototype_args()

Returns the arguments required to construct a simple prototype of the object.

Usage

Dictionary$prototype_args(key)

Arguments

Returns

list() of prototype arguments

Method clone()

The objects of this class are cloneable with this method.

Usage

Dictionary$clone(deep = FALSE)

Arguments

Examples

library(R6)
item1 = R6Class("Item", public = list(x = 1))
item2 = R6Class("Item", public = list(x = 2))
d = Dictionary$new()
d$add("a", item1)
d$add("b", item2)
d$add("c", item1$new())
d$keys()
d$get("a")
d$mget(c("a", "b"))

Description

Given a Dictionary, retrieve objects with provided keys.

• dictionary_sugar_get() to retrieve a single object with key .key.

• dictionary_sugar_mget() to retrieve a list of objects with keys .keys.

• dictionary_sugar() is deprecated in favor of dictionary_sugar_get().

• If .key or .keys is missing, the dictionary itself is returned.

Arguments in ... must be named and are consumed in the following order:

1. All arguments whose names match the name of an argument of the constructor are passed to the ⁠$get()⁠ method of the Dictionary for construction.

2. All arguments whose names match the name of a parameter of the paradox::ParamSet of the constructed object are set as parameters. If there is no paradox::ParamSet in obj$param_set, this step is skipped.

3. All remaining arguments are assumed to be regular fields of the constructed R6 instance, and are assigned via <-.

Usage

dictionary_sugar_get(dict, .key, ..., .dicts_suggest = NULL)

dictionary_sugar(dict, .key, ..., .dicts_suggest = NULL)

dictionary_sugar_mget(dict, .keys, ..., .dicts_suggest = NULL)

Arguments

Value

R6::R6Class()

Examples

library(R6)
item = R6Class("Item", public = list(x = 0))
d = Dictionary$new()
d$add("key", item)
dictionary_sugar_get(d, "key", x = 2)

Description

Covenience wrapper around dictionary_sugar_get and dictionary_sugar_mget to allow easier avoidance of ID clashes which is useful when the same object is used multiple times and the ids have to be unique. Let ⁠<key>⁠ be the key of the object to retrieve. When passing the ⁠<key>_<n>⁠ to this function, where ⁠<n>⁠ is any natural number, the object with key ⁠<key>⁠ is retrieved and the suffix ⁠_<n>⁠ is appended to the id after the object is constructed.

Usage

dictionary_sugar_inc_get(dict, .key, ..., .dicts_suggest = NULL)

dictionary_sugar_inc_mget(dict, .keys, ..., .dicts_suggest = NULL)

Arguments

Value

An element from the dictionary.

Examples

d = Dictionary$new()
d$add("a", R6::R6Class("A", public = list(id = "a")))
d$add("b", R6::R6Class("B", public = list(id = "c")))
obj1 = dictionary_sugar_inc_get(d, "a_1")
obj1$id

obj2 = dictionary_sugar_inc_get(d, "b_1")
obj2$id

objs = dictionary_sugar_inc_mget(d, c("a_10", "b_2"))
map(objs, "id")

Description

Helps to suggest alternatives from a list of strings, based on the string similarity in utils::adist().

Usage

did_you_mean(str, candidates)

Arguments

Value

(character(1)). Either a phrase suggesting one or more candidates from candidates, or an empty string if no close match is found.

Examples

did_you_mean("yep", c("yes", "no"))

Description

Extracts the distinct values of an atomic vector, with the possibility to drop levels and remove missing values.

Usage

distinct_values(x, drop = TRUE, na_rm = TRUE)

Arguments

Value

(atomic vector()) with distinct values in no particular order.

Examples

# for factors:
x = factor(c(letters[1:2], NA), levels = letters[1:3])
distinct_values(x)
distinct_values(x, na_rm = FALSE)
distinct_values(x, drop = FALSE)
distinct_values(x, drop = FALSE, na_rm = FALSE)

# for logicals:
distinct_values(TRUE, drop = FALSE)

# for numerics:
distinct_values(sample(1:3, 10, replace = TRUE))

Description

Evaluates a function while both recording an output log and measuring the elapsed time. There are currently three different modes implemented to encapsulate a function call:

• "none": Just runs the call in the current session and measures the elapsed time. Does not keep a log, output is printed directly to the console. Works well together with traceback().

• "try": Similar to "none", but catches error. Output is printed to the console and not logged.

• "evaluate": Uses the package evaluate to call the function, measure time and do the logging.

• "callr": Uses the package callr to call the function, measure time and do the logging. This encapsulation spawns a separate R session in which the function is called. While this comes with a considerable overhead, it also guards your session from being teared down by segfaults.

Usage

encapsulate(
  method,
  .f,
  .args = list(),
  .opts = list(),
  .pkgs = character(),
  .seed = NA_integer_,
  .timeout = Inf
)

Arguments

Value

(named list()) with three fields:

• "result": the return value of .f

• "elapsed": elapsed time in seconds. Measured as proc.time() difference before/after the function call.

• "log": data.table() with columns "class" (ordered factor with levels "output", "warning" and "error") and "message" (character()).

Examples

f = function(n) {
  message("hi from f")
  if (n > 5) {
    stop("n must be <= 5")
  }
  runif(n)
}

encapsulate("none", f, list(n = 1), .seed = 1)

if (requireNamespace("evaluate", quietly = TRUE)) {
  encapsulate("evaluate", f, list(n = 1), .seed = 1)
}

if (requireNamespace("callr", quietly = TRUE)) {
  encapsulate("callr", f, list(n = 1), .seed = 1)
}

Description

enframe() returns a data.table::data.table() with two columns: The names of x (or seq_along(x) if unnamed) and the values of x.

deframe() converts a two-column data.frame to a named vector. If the data.frame only has a single column, an unnamed vector is returned.

Usage

enframe(x, name = "name", value = "value")

deframe(x)

Arguments

Value

data.table::data.table() or named vector.

Examples

x = 1:3
enframe(x)

x = set_names(1:3, letters[1:3])
enframe(x, value = "x_values")

Description

Given a formula() f, returns all variables used on the left-hand side and right-hand side of the formula.

Usage

extract_vars(f)

Arguments

Value

(list()) with elements "lhs" and "rhs", both character().

Examples

extract_vars(Species ~ Sepal.Width + Sepal.Length)
extract_vars(Species ~ .)

Description

Operates on a named list of bibentry() entries and formats them nicely for documentation with roxygen2.

• format_bib() is intended to be called in the ⁠@references⁠ section and prints the complete entry using toRd().

• cite_bib() returns the family name of the first author (if available, falling back to the complete author name if not applicable) and the year in format "[LastName] (YYYY)".

Usage

format_bib(..., bibentries = NULL, envir = parent.frame())

cite_bib(..., bibentries = NULL, envir = parent.frame())

Arguments

Value

(character(1)).

Examples

bibentries = list(checkmate = citation("checkmate"), R = citation())
format_bib("checkmate")
format_bib("R")
cite_bib("checkmate")
cite_bib("checkmate", "R")

Description

Given the left-hand side and right-hand side as character vectors, generates a new stats::formula().

Usage

formulate(lhs = character(), rhs = character(), env = NULL, quote = "right")

Arguments

Value

stats::formula().

Examples

formulate("Species", c("Sepal.Length", "Sepal.Width"))
formulate(rhs = c("Sepal.Length", "Sepal.Width"))

Description

Provides access to the private members of R6::R6Class objects.

Usage

get_private(x)

Arguments

Value

environment() of private members, or NULL if x is not an R6 object.

Examples

library(R6)
item = R6Class("Item", private = list(x = 1))$new()
get_private(item)$x

Description

Convenience function to assign a value to a private field of an R6::R6Class instance.

Usage

get_private(x, which) <- value

Arguments

Value

The R6 instance x, modified in-place. If it is not an R6 instance, NULL is returned.

Examples

library(R6)
item = R6Class("Item", private = list(x = 1))$new()
get_private(item)$x
get_private(item, "x") = 2L
get_private(item)$x

Description

Retrieves the current random seed (.Random.seed in the global environment), and initializes the RNG first, if necessary.

Usage

get_seed()

Value

integer(). Depends on the base::RNGkind().

Examples

str(get_seed())

Description

Simply checks if a list contains a given object.

• NB1: Objects are compared with identity.

• NB2: Only use this on lists with complex objects, for simpler structures there are faster operations.

• NB3: Clones of R6 objects are not detected.

Usage

has_element(.x, .y)

Arguments

Examples

has_element(list(1, 2, 3), 1)

Description

Returns the part of an object to be used to calculate its hash.

Usage

hash_input(x)

## S3 method for class ''function''
hash_input(x)

## S3 method for class 'data.table'
hash_input(x)

## Default S3 method:
hash_input(x)

Arguments

Methods (by class)

• hash_input(`function`): The formals and the body are returned in a list(). This ensures that the bytecode or parent environment are not included. in the hash.

• hash_input(data.table): The data.table is converted to a regular list and hash_input() is applied to all elements. The conversion to a list ensures that keys and indices are not included in the hash.

• hash_input(default): Returns the object as is.

Description

None.

Usage

ids(xs)

Arguments

Value

(character()).

Examples

xs = list(a = list(id = "foo", a = 1), bar = list(id = "bar", a = 2))
ids(xs)

Description

Insert elements from y into x by name, or remove elements from x by name. Works for vectors, lists, environments and data frames and data tables. Objects with reference semantic (environment() and data.table::data.table()) might be modified in-place.

Usage

insert_named(x, y)

## S3 method for class ''NULL''
insert_named(x, y)

## Default S3 method:
insert_named(x, y)

## S3 method for class 'environment'
insert_named(x, y)

## S3 method for class 'data.frame'
insert_named(x, y)

## S3 method for class 'data.table'
insert_named(x, y)

remove_named(x, nn)

## S3 method for class 'environment'
remove_named(x, nn)

## S3 method for class 'data.frame'
remove_named(x, nn)

## S3 method for class 'data.table'
remove_named(x, nn)

Arguments

Value

Modified object.

Examples

x = list(a = 1, b = 2)
insert_named(x, list(b = 3, c = 4))
remove_named(x, "b")

Description

An alternative interface for do.call(), similar to the deprecated function in purrr. This function tries hard to not evaluate the passed arguments too eagerly which is important when working with large R objects.

It is recommended to pass all arguments named in order to not rely on positional argument matching.

Usage

invoke(
  .f,
  ...,
  .args = list(),
  .opts = list(),
  .seed = NA_integer_,
  .timeout = Inf
)

Arguments

Examples

invoke(mean, .args = list(x = 1:10))
invoke(mean, na.rm = TRUE, .args = list(1:10))

Description

Check for a Single Scalar Value

Usage

is_scalar_na(x)

Arguments

Value

(logical(1)).

Description

Filters vector x to only keep elements which are in bounds ⁠[lower, upper]⁠. This is equivalent to the following, but tries to avoid unnecessary allocations:

 x[!is.na(x) & x >= lower & x <= upper]

Currently only works for integer x.

Usage

keep_in_bounds(x, lower, upper)

Arguments

Value

(integer()) with only values in ⁠[lower, upper]⁠.

Examples

keep_in_bounds(sample(20), 5, 10)

Description

leanify_r6 moves the content of an R6::R6Class's functions to an environment, usually the package's namespace, to save space during serialization of R6 objects. leanify_package move all methods of all R6 Classes to an environment.

The function in the class (i.e. the object generator) is replaced by a stump function that does nothing except calling the original function that now resides somewhere else.

It is possible to call this function after the definition of an R6::R6 class inside a package, but it is preferred to use leanify_package() to just leanify all R6::R6 classes inside a package.

Usage

leanify_r6(cls, env = cls$parent_env)

leanify_package(pkg_env = parent.frame(), skip_if = function(x) FALSE)

Arguments

Value

NULL.

Description

Loads a data set with name id from package package and returns it. If the package is not installed, an error with condition "packageNotFoundError" is raised. The name of the missing packages is stored in the condition as packages.

Usage

load_dataset(id, package, keep_rownames = FALSE)

Arguments

Examples

head(load_dataset("iris", "datasets"))

Description

Replaces all values in x which match old with values in new. Values are matched with base::match().

Usage

map_values(x, old, new)

Arguments

Value

(vector()) of the same length as x.

Examples

x = letters[1:5]

# replace all "b" with "_b_", and all "c" with "_c_"
old = c("b", "c")
new = c("_b_", "_c_")
map_values(x, old, new)

Description

A simple Dictionary storing objects of class Callback. Each callback has an associated help page, see mlr_callbacks_[id].

This dictionary can get populated with additional callbacks by add-on packages. As a convention, the key should start with the name of the package, i.e. package.callback.

For a more convenient way to retrieve and construct learners, see clbk()/clbks().

Usage

mlr_callbacks

Format

An object of class DictionaryCallbacks (inherits from Dictionary, R6) of length 13.

Description

Modifies elements of a vector selectively, similar to the functions in purrr.

modify_if() applies a predicate function .p to all elements of .x and applies .f to those elements of .x where .p evaluates to TRUE.

modify_at() applies .f to those elements of .x selected via .at.

Usage

modify_if(.x, .p, .f, ...)

modify_at(.x, .at, .f, ...)

Arguments

Examples

x = modify_if(iris, is.factor, as.character)
str(x)

x = modify_at(iris, 5, as.character)
x = modify_at(iris, "Sepal.Length", sqrt)
str(x)

Description

Create a Named List

Usage

named_list(nn = character(0L), init = NULL)

Arguments

Value

(named list()).

Examples

named_list(c("a", "b"))
named_list(c("a", "b"), init = 1)

Description

Creates a simple atomic vector with init as values.

Usage

named_vector(nn = character(0L), init = NA)

Arguments

Value

(named vector()).

Examples

named_vector(c("a", "b"), NA)
named_vector(character())

Description

A simple wrapper around base::names(). Returns a character vector even if no names attribute is set. Values NA and "" are treated as missing and replaced with the value provided in missing_val.

Usage

names2(x, missing_val = NA_character_)

Arguments

Value

(character(length(x))).

Examples

x = 1:3
names(x)
names2(x)

names(x)[1:2] = letters[1:2]
names(x)
names2(x, missing_val = "")

Description

Simply opens a manual page specified in "package::topic" syntax.

Usage

open_help(man)

Arguments

Value

Nothing.

Description

catf(), messagef(), warningf() and stopf() are wrappers around base::cat(), base::message(), base::warning() and base::stop(), respectively. The call is not included for warnings and errors.

Usage

catf(msg, ..., file = "", wrap = FALSE)

messagef(msg, ..., wrap = FALSE)

warningf(msg, ..., wrap = FALSE)

stopf(msg, ..., wrap = FALSE)

Arguments

Examples

messagef("
  This is a rather long %s
  on multiple lines
  which will get wrapped.
", "string", wrap = 15)

Description

Performs base::cbind() on data.tables, possibly by reference.

Usage

rcbind(x, y)

Arguments

Value

(data.table::data.table()): Updated x .

Examples

x = data.table::data.table(a = 1:3, b = 3:1)
y = data.table::data.table(c = runif(3))
rcbind(x, y)

Description

rd_info() is an internal generic to generate Rd or markdown code to be used in manual pages. rd_format_string() and rd_format_range() are string functions to assist generating proper Rd code.

Usage

rd_info(obj, ...)

rd_format_range(lower, upper)

rd_format_string(str, quote = c("\\dQuote{", "}"))

rd_format_packages(packages)

Arguments

Value

character(), possibly with markdown code.

Description

Repeats all vectors of a list .x to the length of the longest vector using rep() with argument length.out. This operation will only work if the length of the longest vectors is an integer multiple of all shorter vectors, and will throw an exception otherwise.

Usage

recycle_vectors(.x)

Arguments

Value

(list()) with vectors of same size.

Examples

recycle_vectors(list(a = 1:3, b = 2))

Description

Register a function callback to be called after a namespace is loaded. Calls callback once if the namespace has already been loaded before and also adds an unload-hook that removes the load hook.

Usage

register_namespace_callback(pkgname, namespace, callback)

Arguments

Value

NULL.

Description

Returns an integer vector to order vector x according to vector y.

Usage

reorder_vector(x, y, na_last = NA)

Arguments

Value

(integer()).

Examples

# x subset of y
x = c("b", "a", "c", "d")
y = letters
x[reorder_vector(x, y)]

# y subset of x
y = letters[1:3]
x[reorder_vector(x, y)]
x[reorder_vector(x, y, na_last = TRUE)]
x[reorder_vector(x, y, na_last = FALSE)]

Description

Packages are loaded (not attached) via base::requireNamespace(). If at least on package can not be loaded, an exception of class "packageNotFoundError" is raised. The character vector of missing packages is stored in the condition as packages.

Usage

require_namespaces(
  pkgs,
  msg = "The following packages could not be loaded: %s",
  quietly = FALSE
)

Arguments

Value

(character()) of loaded packages (invisibly).

Examples

require_namespaces("mlr3misc")

# catch condition, return missing packages
tryCatch(require_namespaces(c("mlr3misc", "foobaaar")),
  packageNotFoundError = function(e) e$packages)

Description

Similar to the tibble function tribble(), this function allows to construct tabular data in a row-wise fashion.

The first arguments passed as formula will be interpreted as column names. The remaining arguments will be put into the resulting table.

Usage

rowwise_table(..., .key = NULL)

Arguments

Value

data.table::data.table().

Examples

rowwise_table(
  ~a, ~b,
  1, "a",
  2, "b"
)

Description

seq_row() creates a sequence along the number of rows of x, seq_col() a sequence along the number of columns of x. seq_len0() and seq_along0() are the 0-based counterparts to base::seq_len() and base::seq_along().

Usage

seq_row(x)

seq_col(x)

seq_len0(n)

seq_along0(x)

Arguments

Examples

seq_len0(3)

Description

Simple wrapper for class(x) = classes.

Usage

set_class(x, classes)

Arguments

Value

Object x, with updated class attribute.

Examples

set_class(list(), c("foo1", "foo2"))

Description

Sets the names (or colnames) of x to nm. If nm is a function, it is used to transform the already existing names of x.

Usage

set_names(x, nm = x, ...)

set_col_names(x, nm, ...)

Arguments

Value

x with updated names.

Examples

x = letters[1:3]

# name x with itself:
x = set_names(x)
print(x)

# convert names to uppercase
x = set_names(x, toupper)
print(x)

Description

Convenience function to modfiy (or overwrite) the values of a paradox::ParamSet.

Usage

set_params(.ps, ..., .values = list(), .insert = TRUE)

Arguments

Examples

if (requireNamespace("paradox")) {
  param_set = paradox::ps(a = paradox::p_dbl(), b = paradox::p_dbl())
  param_set$values$a = 0
  set_params(param_set, a = 1, .values = list(b = 2), .insert = TRUE)
  set_params(param_set, a = 3, .insert = FALSE)
  set_params(param_set, b = 4, .insert = TRUE)
}

Description

A version of sample() which does not treat positive scalar integer x differently. See example.

Usage

shuffle(x, n = length(x), ...)

Arguments

Examples

x = 2:3
sample(x)
shuffle(x)

x = 3
sample(x)
shuffle(x)

Description

Collapse multiple strings into a single string.

Usage

str_collapse(str, sep = ", ", quote = character(), n = Inf, ellipsis = "[...]")

Arguments

Value

(character(1)).

Examples

str_collapse(letters, quote = "'", n = 5)

Description

Formats a text block for printing.

Usage

str_indent(initial, str, width = 0.9 * getOption("width"), exdent = 2L, ...)

Arguments

Value

(character()).

Examples

cat(str_indent("Letters:", str_collapse(letters), width = 25), sep = "\n")

Description

str_trunc() truncates a string to a given width.

Usage

str_trunc(str, width = 0.9 * getOption("width"), ellipsis = "[...]")

Arguments

Value

(character()).

Examples

str_trunc("This is a quite long string", 20)

Description

Converts a logical vector from binary to decimal. The bit vector may have any length, the last position is the least significant, i.e. bits are multiplied with 2^(n-1), 2^(n-2), ..., 2^1, 2^0 where n is the length of the bit vector.

Usage

to_decimal(bits)

Arguments

Value

(integer(1)).

Description

Topologically sort a graph, where we are passed node labels and a list of direct parents for each node, as labels, too. A node can be 'processed' if all its parents have been 'processed', and hence occur at previous indices in the resulting sorting. Returns a table, in topological row order for IDs, and an entry depth, which encodes the topological layer, starting at 0. So nodes with depth == 0 are the ones with no dependencies, and the one with maximal depth are the ones on which nothing else depends on.

Usage

topo_sort(nodes)

Arguments

Value

(data.table::data.table()) with columns id, depth, sorted topologically for IDs.

Examples

nodes = rowwise_table(
  ~id, ~parents,
  "a", "b",
  "b", "c",
  "c", character()
)
topo_sort(nodes)

Description

Transposes a list of list, and turns it inside out, similar to the function transpose() in package purrr.

Usage

transpose_list(.l)

Arguments

Value

list().

Examples

x = list(list(a = 2, b = 3), list(a = 5, b = 10))
str(x)
str(transpose_list(x))

# list of data frame rows:
transpose_list(iris[1:2, ])

Description

Transforms list columns to separate columns, possibly by reference. The original columns are removed from the returned table. All non-atomic objects in the list columns are expand to new list column.

Usage

unnest(x, cols, prefix = NULL)

Arguments

Value

(data.table::data.table()).

Examples

x = data.table::data.table(
  id = 1:2,
  value = list(list(a = 1, b = 2), list(a = 2, b = 2))
)
print(x)
unnest(data.table::copy(x), "value")
unnest(data.table::copy(x), "value", prefix = "{col}.")

Description

Works similar to base::which.min()/base::which.max(), but corrects for ties. Missing values are treated as Inf for which_min and as -Inf for which_max().

Usage

which_min(x, ties_method = "random", na_rm = FALSE)

which_max(x, ties_method = "random", na_rm = FALSE)

Arguments

Value

(integer()): Index of the minimum/maximum value. Returns an empty integer vector for empty input vectors and vectors with no non-missing values (if na_rm is TRUE). Returns NA if na_rm is FALSE and at least one NA is found in x.

Examples

x = c(2, 3, 1, 3, 5, 1, 1)
which_min(x, ties_method = "first")
which_min(x, ties_method = "last")
which_min(x, ties_method = "random")

which_max(x)
which_max(integer(0))
which_max(NA)
which_max(c(NA, 1))

Description

Attaches a package to the search path (if not already attached), executes code and eventually removes the package from the search path again, restoring the previous state.

Note that this function is deprecated in favor of the (now fixed) version in withr.

Usage

with_package(package, code, ...)

Arguments

Value

Result of the evaluation of code.

See Also

withr package.