Package: mixKernel
Type: Package
Title: Omics Data Integration Using Kernel Methods
Version: 0.9-2
Date: 2025-04-19
Depends: R (>= 3.5.0), mixOmics, ggplot2, reticulate (>= 1.14)
Imports: vegan, phyloseq, corrplot, psych, quadprog, LDRTools, Matrix,
        methods, markdown
Suggests: rmarkdown, knitr
Authors@R: c(person("Nathalie", "Vialaneix", role = c("aut", "cre"), email="nathalie.vialaneix@inrae.fr"),
             person("Celine", "Brouard", role = c("aut"), email="celine.brouard@inrae.fr"),
             person("Remi", "Flamary", role = c("aut"), email="remi.flamary@polytechnique.edu"),
             person("Julien", "Henry", role = c("aut"), email="julien.henry@inrae.fr"),
             person("Jerome", "Mariette", role = c("aut"), email="jerome.mariette@inrae.fr"))
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Description: Kernel-based methods are powerful methods for integrating
        heterogeneous types of data. mixKernel aims at providing
        methods to combine kernel for unsupervised exploratory
        analysis. Different solutions are provided to compute a
        meta-kernel, in a consensus way or in a way that best preserves
        the original topology of the data. mixKernel also integrates
        kernel PCA to visualize similarities between samples in a non
        linear space and from the multiple source point of view
        <doi:10.1093/bioinformatics/btx682>. A method to select (as
        well as funtions to display) important variables is also
        provided <doi:10.1093/nargab/lqac014>.
License: GPL (>= 2)
BugReports: https://forgemia.inra.fr/genotoul-bioinfo/mixKernel/-/issues
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
URL: http://mixkernel.clementine.wf
LazyData: true
Config/reticulate: list( packages = list( list(package = "autograd",
        pip = TRUE), list(package = "numpy", pip = TRUE), list(package
        = "scipy", pip = TRUE), list(package = "sklearn", pip = TRUE) )
        )
RoxygenNote: 7.3.0
Packaged: 2026-07-03 23:30:49 UTC; root
Author: Nathalie Vialaneix [aut, cre], Celine Brouard [aut], Remi
        Flamary [aut], Julien Henry [aut], Jerome Mariette [aut]
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2025-04-19 09:10:02 UTC
RemoteUrl: https://github.com/cran/mixKernel
RemoteRef: HEAD
RemoteSha: 5dc064b1380cc746fe66238c3aa69201211b9203